GTTCATACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCACATCATCTCCAAAAGCACTTGGGGGTTTTAATCACT
GATCAATCTCTACAGTCCCATATTCTGATTTTAAGTAATACAATATCTAC
TTATGTTGAATTTATTTGTATTTTAAAAGACCAGAAAATAAAAATAACAT
ACTTCTAATGGCTCTACACTATATACTTATGGAATCTACAATATCATGTA
TCCATACTTATTGCAAATAAAACCTTCGATAATATATTTAAAGACAAGTA
TTAAGTACTTTGATTTCTCTCAACAATATGCTACTGCAATTCTTCTACTT
TGTGACAGGAGTTATCGTATGCTAAAGTATTTCCATTAAAGTCTTATACT
CTCTTCATTGTACAAGACAGAGAATTCTAGACAGGCACTGGCATAAACAT
CAGGAGAAGGAATAAAGAGTGATTAATGTAACCAAAACATCACTGTCATT
TCATTTGTGACCTAATACAACTAACATTTTCAATATAATCAATGTAGATA
TTTGTTTACACCACAGAGAATAAATATGTAGTAAAGACATATGGCTCTGT
AGTGATCAAATGTATACTAGATTCACTTGTTCTCTTTTACATAAAATTCA
CGAGGTATCACTGACTTTCTGGATTGACTGTGGAGGGCAGTGAAATGTGG
ACACACCTGTTCTCTGGCAACACAGTGACAGGTATTGATGCTAGAAN

NTTGCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTACTGGTTTATGTGTTCA
GAGCATTCCTCTTAATTTTGGGGGGAAAGCTAGTTTATAAACTAATGAAA
TTTGTTTTATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGNNAGNNNGACNATCNNCTATTTCTTTACCCTATAG
CTGAACTCGTTATATACTGCGCCTCTATGAATCACTCTCTTCATTTTTTT
AAGGTACCGTCTTTTCTTATTAATACTCCTATTGTTTTTTTTCTTGCTTA
AATTCTCTTCATCGGCAACTAGAATCTTTTTTATTACTAATACACATTTG
GTCTTTACCTCCTTTCCTACTCTTCTTTTCTTTTCTCCCATTCTTTTTTT
TCCTCCCCCCCCTTTTATTTTTACTTTTCTAGAACTTCATTCTATCTTTA
TATTATTTTTCTTTTATATACACCCCCCTTCTTTTTCTTTTATTATTCAC
CCCCCTTTATCTTTCTCTTTTAATTTCCGTCTATGTTTTATATTTCATTC
TTTCAGAATAGTATATCCCTTTTATCTCCATTTATTTCTGTTCTATTTCG
TATATATTTTATCTTCTATTTTTGCCTCTATATTTTCTATGCTCCGTTTA
TATCTGTCTTTCCGCCCCGCTCCCTTCCTCTTTTTGCCCTTCTTTCTCTC
TGTTTTTTCCCCTTCTATCTTTTTTTTCCTCAATTTCGGCCCGCTTCCCT
TGTAGTCATATATTCTTCTTCACGACCATTTTTATCTCTCTTTTAATTAT
TTCTTT

Query= MSMg01no532_h13.b1 MSMg01no532_h13.b1 CHROMAT_FILE:
MSMg01no532_h13.b1 PHD_FILE: MSMg01no532_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:24 2005
         (664 letters)



>mm_chr3_124801979_124803042
          Length = 1064

 Score = 1261 bits (652), Expect = 0.0
 Identities = 658/660 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacatcatctccaaaagcacttgggggttttaatcactgatcaatctctacagtc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacatcatctgcaaaagcacttgggggttttaatcactgatcaatctctacagtc 264

                                                                       
Query: 65  ccatattctgattttaagtaatacaatatctacttatgttgaatttatttgtattttaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccatattctgattttaagtaatacaatatctacttatgttgaatttatttgtattttaaa 324

                                                                       
Query: 125 agaccagaaaataaaaataacatacttctaatggctctacactatatacttatggaatct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaccagaaaataaaaataacatacttctaatggctctacactatatacttatggaatct 384

                                                                       
Query: 185 acaatatcatgtatccatacttattgcaaataaaaccttcgataatatatttaaagacaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acaatatcatgtatccatacttattgcaaataaaaccttcgataatatatttaaagacaa 444

                                                                       
Query: 245 gtattaagtactttgatttctctcaacaatatgctactgcaattcttctactttgtgaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtattaagtactttgatttctctcaacaatatgctactgcaattcttctactttgtgaca 504

                                                                       
Query: 305 ggagttatcgtatgctaaagtatttccattaaagtcttatactctcttcattgtacaaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggagttatcgtatgctaaagtatttccattaaagtcttatactctcttcattgtacaaga 564

                                                                       
Query: 365 cagagaattctagacaggcactggcataaacatcaggagaaggaataaagagtgattaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagagaattctagacaggcactggcataaacatcaggagaaggaataaagagtgattaat 624

                                                                       
Query: 425 gtaaccaaaacatcactgtcatttcatttgtgacctaatacaactaacattttcaatata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 625 gtaaccaaaacatcactgtcatttcatttgtgacctaatacaactaacattttcaatgta 684

                                                                       
Query: 485 atcaatgtagatatttgtttacaccacagagaataaatatgtagtaaagacatatggctc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atcaatgtagatatttgtttacaccacagagaataaatatgtagtaaagacatatggctc 744

                                                                       
Query: 545 tgtagtgatcaaatgtatactagattcacttgttctcttttacataaaattcacgaggta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgtagtgatcaaatgtatactagattcacttgttctcttttacataaaattcacgaggta 804

                                                                       
Query: 605 tcactgactttctggattgactgtggagggcagtgaaatgtggacacacctgttctctgg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tcactgactttctggattgactgtggagggcagtgaaatgtggacacacctgttctctgg 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)