Query= MSMg01no532_k15.b1 MSMg01no532_k15.b1 CHROMAT_FILE:
MSMg01no532_k15.b1 PHD_FILE: MSMg01no532_k15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:38 2005
(549 letters)
>mm_chr3_42117461_42118420
Length = 960
Score = 975 bits (504), Expect = 0.0
Identities = 547/562 (97%), Gaps = 14/562 (2%)
Strand = Plus / Plus
Query: 1 ctttattgtctctagtcaaaaaaacccacaaacaaacaaacaaacaaacaa-ccttatga 59
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 200 ctttattgtctctagtcaaaaaaacccacaaacaaacaaacaaacaaacaaaccttatga 259
Query: 60 a-ctctga-gcaccagacttccttcactcccaa--tcttccaactaccaggaaatcga-a 114
| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 260 agctctgatgcaccagacttccttcactcccaaactcttccaactaccaggaaatcgata 319
Query: 115 tcaatgacatctgtcaatcatccattctgcttatgg-ag-ctgc-tctgctcattagctg 171
|||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||
Sbjct: 320 tcaatgacatctgtcaatcatccattctgcttatggcagtctgcctctgctcattagctg 379
Query: 172 cccccaacaccattcataagacagtgt-agagag-caaatacaagggaggctgcctgc-g 228
||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| |
Sbjct: 380 cccccaacaccattcataagacagtgttagagagtcaaataca-gggaggctgcctgcag 438
Query: 229 cctttgtttcaatgtt-taacatttatcacttttgaacatttcctaccaactgagatacc 287
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cctttgtttcaatgtcataacatttatcacttttgaacatttcctaccaactgagatacc 498
Query: 288 atcttcccacatttttcaggtttcctttttttccttttgactaatatctggcaattcctc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atcttcccacatttttcaggtttcctttttttccttttgactaatatctggcaattcctc 558
Query: 348 cacctaatctttttctcatgcatccttcagatgcatccttccttctattctcatgatgtg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cacctaatctttttctcatgcatccttcagatgcatccttccttctattctcatgatgtg 618
Query: 408 tgatttccaagccaattgtattttactgttgggggcatatttatgtacatactagcaatc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgatttccaagccaattgtattttactgttgggggcatatttatgtacatactagcaatc 678
Query: 468 atacaatgaaattttatttgtttctttcctagctcctccaaattcaatatgatgaacatc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atacaatgaaattttatttgtttctttcctagctcctccaaattcaatatgatgaacatc 738
Query: 528 aataaatcatgtttatcataaa 549
||||||||||||||||||||||
Sbjct: 739 aataaatcatgtttatcataaa 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 960
Length adjustment: 10
Effective length of query: 539
Effective length of database: 950
Effective search space: 512050
Effective search space used: 512050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_k15.g1 MSMg01no532_k15.g1 CHROMAT_FILE:
MSMg01no532_k15.g1 PHD_FILE: MSMg01no532_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:38 2005
(580 letters)
>mm_chr3_42254499_42255478
Length = 980
Score = 1091 bits (564), Expect = 0.0
Identities = 576/580 (99%)
Strand = Plus / Minus
Query: 1 ccttaagagagactgagtggtttgaatttgctataaaatatgattgaaaataactgacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 780 ccttaagagagactgagtggtttgaatttgctataaaatatgattgaaaataactaacag 721
Query: 61 gagattatttttggcttataaatgcatagtttctaattccaatttaatatcttttaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gagattatttttggcttataaatgcatagtttctaattccaatttaatatcttttaaaaa 661
Query: 121 aggacctgtaagatcatttttatctttacagtgtgtataggggttccccaagaagtaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aggacctgtaagatcatttttatctttacagtgtgtataggggttccccaagaagtaatt 601
Query: 181 tttcaaagtatattttgatgttgaagataaaattcttaccttgatattaaaaaatattac 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tttcaaagtatattttgatgtggaagataaaattcttaccttgatattaaaaaatattac 541
Query: 241 caaggcagataatactgctcatctaaattgaaagattataagtattaaattctacaaata 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 540 caaggcagataatactgctcatctaaattgaaagattataactattaaattctacaaata 481
Query: 301 tggatctataatctccagtgttggtaacaataatttttcatttttatttgcctgtcaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tggatctataatctccagtgttggtaacaataatttttcatttttatttgcctgtcaaac 421
Query: 361 atctatgactcagattaacttgacagctttatgaagcacaaaggttctgtccaatccagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 atctatgactcagattaacttgacagctttatgaagcacaaaggttctgtccaatccagt 361
Query: 421 acaacagggtagagcccataacaaaattagagagattgtagaaatagctttataactaat 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 360 acaacagggtagagcccataacaaaattagagcgattgtagaaatagctttataactaat 301
Query: 481 gatactattttgttctcatattaaactatccttcacatattaaaaataataatctccagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gatactattttgttctcatattaaactatccttcacatattaaaaataataatctccagg 241
Query: 541 gatcaatgggataacacacaatgtccttagtccgtatttg 580
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gatcaatgggataacacacaatgtccttagtccgtatttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
