Query= MSMg01no532_l13.b1 MSMg01no532_l13.b1 CHROMAT_FILE:
MSMg01no532_l13.b1 PHD_FILE: MSMg01no532_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:43 2005
(674 letters)
>mm_chr3_19208732_19209799
Length = 1068
Score = 1218 bits (630), Expect = 0.0
Identities = 659/670 (98%), Gaps = 6/670 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtgtaaattactaagtggaatttcaaataatacttttgttactttgaagtgta 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 gaattcagtgtaaaatactaagtggaatttcaaataatacttttgttactttgaagtgta 809
Query: 65 gtttgtgaactgtattttttattattgcttaacacgttttaaagttccagaataatatca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 gtttgtgaactgtattttttattattgcttaacacgttttaaagttccagaataatatca 749
Query: 125 aaatatattaaagcactcaggagaaggttttcaataatagtaattaaaggtctttaatgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 aaatatattaaagcactcaggagaaggttttcaataatagtaattaaaggtctttaatgg 689
Query: 185 aagtaactttcatttctaaatactgttttcttcctgagatcagcagacatgatgaacacc 244
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 688 aagtaactttcatttctaaatactgttttcttcctgagatcagcagacatgacgaacacc 629
Query: 245 cactttcacttacatataaatagtaaaggcacactttatctaaagttatgaaatatgtgt 304
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 628 cactttcacttacatataaatagt-aaggcacactttatctaaagttatgaaatatgtgt 570
Query: 305 tacatgtccctgcttcctgagagggaagatcaagggattgaaaacaaaactgaccctaag 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 569 tacatgtccctgcttcctgagagggaagatcaagggattgaaaacaaaactgaccccaag 510
Query: 365 agttttacctagtatcttaattaccacacaaaaaccaatttaagcttcagttttctttgc 424
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 509 agctttacctagtatcttaattaccacacaaaaaacaatttaagcttcagttttctttgc 450
Query: 425 ccacccctagactaagattaaatgggtagtggaattttaaaactgtgactgtggcaacaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ccacccctagactaagattaaatgggtagtggaattttaaaactgtgactgtggcaacaa 390
Query: 485 accacaaattctatagaattacaccgattttactagcttttaaaacttataaacaacttc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 accacaaattctatagaattacaccgattttactagcttttaaaacttataaacaacttc 330
Query: 545 cagatctccaagagagtatgtgggaactccttaggctgagacagaacttttcttagtgaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cagatctccaagagagtatgtgggaactccttaggctgagacagaacttttcttagtgaa 270
Query: 605 tacatacctttttcctggtgaacataacagggcttagcagctcactcgagctgacatggg 664
|||||||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct: 269 tacatacctttttcctggtgaacataacaggg--ta-c--ctcactcgagctgacatggg 215
Query: 665 ttaccatcac 674
||||||||||
Sbjct: 214 ttaccatcac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1068
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1058
Effective search space: 702512
Effective search space used: 702512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_l13.g1 MSMg01no532_l13.g1 CHROMAT_FILE:
MSMg01no532_l13.g1 PHD_FILE: MSMg01no532_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:43 2005
(653 letters)
>mm_chr3_19039008_19040060
Length = 1053
Score = 1239 bits (641), Expect = 0.0
Identities = 650/653 (99%)
Strand = Plus / Plus
Query: 1 tgtgttccacaaagcacaaaatatctgccaccagacattcaaaagaagcaaacaaacact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgttccacaaagcacaaaatatctgccaccagacattcaaaagaagcaaacaaacact 260
Query: 61 acactaaactagaaaagccaatatattcagaaacaatacaagtggtggagttagtgcaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acactaaactagaaaagccaatatattcagaaacaatacaagtggtggagttagtgcaca 320
Query: 121 ggggcattaacaattttcctaaaatgtttctacgttcaagaagatagagtgtaaatgtgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggcattaacaattttcctaaaatgtttctacgttcaagaagatagagtgtaaatgtgc 380
Query: 181 aatggtgacatcataaaatatctaagtcaaaacgtgaaaatacactgtgaaaacgatgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatggtgacatcataaaatatctaagtcaaaacgtgaaaatacactgtgaaaacgatgtt 440
Query: 241 tataagacacactggggaaggataataacaaactcagcactcagcgaagatattaaggaa 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tataagacatactggggaaggataataacaaactcagcactcagcgaagatattaaggaa 500
Query: 301 cacagaaacaggatctatcctaagtgtaagagaagggatgaagtaaacaggaccccagtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacagaaacaggatctatcctaagtgtaagagaagggatgaagtaaacaggaccccagtg 560
Query: 361 aacttgaagaaatctcaagtggcagacagcacataattaagaatccctgacagatccagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacttgaagaaatctcaagtggcagacagcacataattaagaatccctgacagatccagg 620
Query: 421 aaaaagggagaaaattttgttttgaagatatgatgggaaaatccatacaaatctgccaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaaagggagaaaattttgttttgaagatatgatgggaaaatccatacaaatctgccaca 680
Query: 481 aatttaaattcacaaagccaagaagctagataaaatggaaacagaaaaacacacaaagaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatttaaattcacaaagccaagaagctagataaaatggaaacagaaaaacacacaaagaa 740
Query: 541 aagactgggctcctgctagcaggagagcttcaaacttagattccagagcacaaccctatc 600
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 741 aagactgggctcctgctagcaggagagcttcaaactcagattccagagcacaaccctatc 800
Query: 601 atccgagacgctgtgtgccctaaagctggctgggcaaggctgctctgccttgg 653
||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atctgagacgctgtgtgccctaaagctggctgggcaaggctgctctgccttgg 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
