NGGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGACAATTTTCATACCTTCGCAAAAGAAATGCTTGCTTTGA
ATTTTTCTTTTCTTTTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTTTTTCTTTAACTTACAGTTTTGTCTTC
AAGAAAAGGCTTTAATCTCCTTTGTGTTCTCTTGCGCCTTTGGCTAAGTT
CTAATACAAAGTGCTTTTACCACCCCACAGCCTCTGGCCTGGAGTACAGT
TGCAATGCTGATGGCTGTTCTTAAGAACTTGCTTTTCTTCACCTCTGGAA
TTCTCAGCCGTCAAGCGGCTGTGCTTTTTCAGTGACAGATGAGGTATTCA
TTTCTGTCCTTTATTTTTACTTGGAAGGAAAATGCTTTATTTCCCATTTA
CTTTAATGTATTTCTGAAGGAGGAGCTTTTAGGAAGTAAAATGTTCTGGC
ACTCTAAAGGCTCCCCTTGCTGTGTGTAATTCTGGGATACTTCTTTCAGT
CTTTCCTCTTGTCACCCGAACTATGCTTCTGTTTGCTCACAAGCTTCTCC
ATACATTTTACAGGACATCGATCATTGTGAAACCTACAAATTGTAGTGCT
GAGGGAAAGAATCCATTTTTCAAAAAAAAAATTTCTGGCCTCTCCTCCTA
ACTTCCATAAAGCGACCCAAAGGATACAATTTATCCACTTAAAATCAA

NNNTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATTTAGCTCTATATTC
CAAATTTTAATTGGGTTATTGGGTTGTTGGTGTCAAAATTCTTGAGCCCT
TTATATATCTTGGAGATTACCCCTCTGTCAGATATCAGATGTAGAAGATA
TTTTCCCAATCTTTTGGGTGTATTTTGGTCCTAATGATGGTGTCCTTTCA
CTTACAGAAGTTACTCAGTTTCATGAGATCTCATTTATTAATTGTTTATC
TCAGTCCCTGAGCTATTGGTGATCTGTTCAGGAAGATGCTTCCTGTACCA
AAGAGTTCAATGTTATTCCCCACTTTCTATTCTATTTGATTTAGTGTATC
TGGTTTTATGTTTAGGTCTTTAATACATTTTGTCTCAATGTAATTCACTA
TATAAACAAACTCAAAGACAAAAACCACATGATCATCTCATTAGATGCTG
AGAAAGCATTTGACAAAATCCAAAACCCTTTCATGATAAAAGTTTTAGAA
ACATCAGGAATTCAAGGCCCATACGTAAACATAATAAAAGCAATATAAAG
CAAACCAGTAGTCAACATCAAATTAAATCAGGAGAAACTGGAAGCAATCC
CACTAAAATCAGGAATTAGACAAGGCTGCCCACTTTCTCCTTACCTATTC
AATACAGTACTTGAAGTCCGAACCAGAGTAATTAGACCACAAAAGGAGAT
CACAGGTATACAATT

Query= MSMg01no532_m18.b1 MSMg01no532_m18.b1 CHROMAT_FILE:
MSMg01no532_m18.b1 PHD_FILE: MSMg01no532_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:49 2005
         (520 letters)



>mm_chr3_76849909_76850828
          Length = 920

 Score =  743 bits (384), Expect = 0.0
 Identities = 465/520 (89%), Gaps = 44/520 (8%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttcataccttcgcaaaagaaatgcttgctttgaatttttcttttcttttcttttctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 792 ttttcataccttcgcaaaagaaatgcttgctttgaatttttcttttcttttctt------ 739

                                                                       
Query: 61  ctctctctctctctctctctctctctctctctctctctctctctctctttttctttaact 120
                                                ||||||||||||||| || ||||
Sbjct: 738 -------------------------------------tctctctctcttttt-ttaaact 717

                                                                       
Query: 121 tacagttttgtcttcaagaaaaggctttaatctcctttgtgttctcttgcgcctttggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tacagttttgtcttcaagaaaaggctttaatctcctttgtgttctcttgcgcctttggct 657

                                                                       
Query: 181 aagttctaatacaaagtgcttttaccaccccacagcctctggcctggagtacagttgcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 656 aagttctaatacaaagtgcttttaccaccccacagcctctggcctggagcacagttgcaa 597

                                                                       
Query: 241 tgctgatggctgttcttaagaacttgcttttcttcacctctggaattctcagccgtcaag 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tgctgatggttgttcttaagaacttgcttttcttcacctctggaattctcagccgtcaag 537

                                                                       
Query: 301 cggctgtgctttttcagtgacagatgaggtattcatttctgtcctttatttttacttgga 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 cgactgtgctttttcagtgacagatgaggtattcatttctgtcctttatttttacttgga 477

                                                                       
Query: 361 aggaaaatgctttatttcccatttactttaatgtatttctgaaggaggagcttttaggaa 420
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 476 aggaaaatgctttatttcccatttactttaatgtatttctgaaggaggggtttttaggaa 417

                                                                       
Query: 421 gtaaaatgttctggcactctaaaggctccccttgctgtgtgtaattctgggatacttctt 480
           ||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 416 gtaaaattttctggcattctaaaggctccccttgctgtgtgtgattctgggatacttctt 357

                                                   
Query: 481 tcagtctttcctcttgtcacccgaactatgcttctgtttg 520
           |||||||||||||||||||||| |||||||| ||||||||
Sbjct: 356 tcagtctttcctcttgtcacccaaactatgcctctgtttg 317


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)