Query= MSMg01no532_m24.b1 MSMg01no532_m24.b1 CHROMAT_FILE:
MSMg01no532_m24.b1 PHD_FILE: MSMg01no532_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:50 2005
(643 letters)
>mm_chr3_14052273_14053311
Length = 1039
Score = 888 bits (459), Expect = 0.0
Identities = 590/677 (87%), Gaps = 74/677 (10%)
Strand = Plus / Minus
Query: 5 gaattcaagtactctgcacatggaggaagagggccactacaatacctcagaaattggtc- 63
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 818 gaattcaagtactctgcacatggaggaagagggccactgcaatacctcagaaattggtca 759
Query: 64 -------------------------------aggcacaaatgcttttaaattactttgtt 92
|||||||||||||||||||||||||||||
Sbjct: 758 gatattttctactgtaagtccatgtatacaaaggcacaaatgcttttaaattactttgtt 699
Query: 93 ttgagaagagagataccagattctttgttcacac---acctcctaggatcctaggaaagt 149
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 698 ttgagaagagagataccggattctttgttcacacagaacctcctaggatcctaggaaagt 639
Query: 150 ttgtatccatactcagtaacccagacatttagagatcacttaaggcatgaaccaaaagtt 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ttgtatccatactcagtaacccagacatttagagatcacttaaggcatgaaccaaaagtt 579
Query: 210 cctagcattttcctgtgccgtgttgaccactg-tcgtcaatcacattaaactgaattctc 268
|||||||||||||||||| ||||||||||||| | |||||||||||||||||||||| ||
Sbjct: 578 cctagcattttcctgtgctgtgttgaccactgat-gtcaatcacattaaactgaattttc 520
Query: 269 aaacatgtataatacaagagttatggctataatagagacccctggaagctgaaggctcca 328
| ||||| |||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 519 agacatgcataatacaagagttatggctataatagagacccctg------gaaggttcca 466
Query: 329 ggaacacataaaatctgatgacaaaagttgtaggcaggggacataaccatcccc-aaaca 387
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
Sbjct: 465 ggaacacataaaatctgatgacaaaa---gtaggcaggggacataaccatccccaaaaga 409
Query: 388 atccatgtagcttgccatcaacaagagatag-acttccattcccattagaatctatatca 446
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 408 atccatgtagcttaccatcaacaagagatagaacttccattcccattagaatctatatca 349
Query: 447 agcaccatgtgccttggatcctacaaatagagctacagggtttaatttgtcataaagatt 506
||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||
Sbjct: 348 agcaccatgtgccttggatcctacaaacagagctacagggcttaatttgccataaagatt 289
Query: 507 cacattataaaatctggatatatatatatatatatatatatatatatatatgcattatat 566
||||||||| ||||||| |||||||||||||||||
Sbjct: 288 cacattatataatctgg--------------------------atatatatgcattatat 255
Query: 567 atacatgtgtataagtatatgtgtgtacatatatatgcatgtattactcagctatgattc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 atacatgtgtataagtatatgtgtgtacatatatatgcatgtattactcagctatgattc 195
Query: 627 tgtcatgagtctcacag 643
|||||||||||||||||
Sbjct: 194 tgtcatgagtctcacag 178
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 8
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1039
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1029
Effective search space: 651357
Effective search space used: 651357
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_m24.g1 MSMg01no532_m24.g1 CHROMAT_FILE:
MSMg01no532_m24.g1 PHD_FILE: MSMg01no532_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:50 2005
(571 letters)
>mm_chr3_13926991_13927960
Length = 970
Score = 1073 bits (555), Expect = 0.0
Identities = 567/571 (99%), Gaps = 1/571 (0%)
Strand = Plus / Plus
Query: 1 atgctttcgtggtttaacaagttaaggtacatactttgtagatcataaatgtgactatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgctttcgtggtttaacaagttaaggtacatactttgtagatcataaatgtgactatta 260
Query: 61 ggaaactagagtatacatttttggtagacagaatagctgtataccaaacagctttatctt 120
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ggaaactagagtacacatttttggtagacagaatagctgtataccaaacagttttatctt 320
Query: 121 aatgaccagtacctttgcaaatgctatctcatgttgcaaaataggaaattttcacttaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgaccagtacctttgcaaatgctatctcatgttgcaaaataggaaattttcacttaga 380
Query: 181 aattatcttgggttatctaggtgggctaatgtgaacaaggatttttttttttttactatg 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 381 aattatcttgggttatctaggtgggctaatgtgagcaaggatttttttttttt-actatg 439
Query: 241 ggaatgcaaaattccaaataaggaaaatcaaaatgatggaagctccagtggttggagtga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggaatgcaaaattccaaataaggaaaatcaaaatgatggaagctccagtggttggagtga 499
Query: 301 tgtattttgaatttggagaagtcatgagacaaaatggtatactacctacagaatatggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtattttgaatttggagaagtcatgagacaaaatggtatactacctacagaatatggaa 559
Query: 361 acgactggcagattctgccctgaactttattaaagtgtatacactaagggcatgggaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 acgactggcagattctgccctgaactttattaaagtgtatacactaagggcatgggaaga 619
Query: 421 tggctcagttattaagaaagttgatgctgtggtgaaggacttggctttagtttcattaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tggctcagttattaagaaagttgatgctgtggtgaaggacttggctttagtttcattaat 679
Query: 481 ctcactagaaggtttccaacagcctctaactccagttttatgatatctgatgccattttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctcactagaaggtttccaacagcctctaactccagttttatgatatctgatgccattttt 739
Query: 541 ggacttctgtctgaaatcacatgcatatggc 571
|||||||||||||||||||||||||||||||
Sbjct: 740 ggacttctgtctgaaatcacatgcatatggc 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 970
Length adjustment: 10
Effective length of query: 561
Effective length of database: 960
Effective search space: 538560
Effective search space used: 538560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
