Query= MSMg01no532_p06.b1 MSMg01no532_p06.b1 CHROMAT_FILE:
MSMg01no532_p06.b1 PHD_FILE: MSMg01no532_p06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:02 2005
(675 letters)
>mm_chr3_20944180_20945254
Length = 1075
Score = 451 bits (233), Expect = e-130
Identities = 239/241 (99%)
Strand = Plus / Plus
Query: 435 cagaaacaatctgctgttaggagctgatctttggaactaagtccttgcaacagaaactag 494
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 635 cagaaacaatctgctgttaggagctgatctttggaactaagtccttgcaacagaaactgg 694
Query: 495 aggaggtcttccattatggaatgaaatattctctgtgcttgtgttttctgaaagcttact 554
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 aggaggtcttccagtatggaatgaaatattctctgtgcttgtgttttctgaaagcttact 754
Query: 555 ttattcccctgatattctgggggtgtattttggtttccttggtatccatcactgtgctca 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ttattcccctgatattctgggggtgtattttggtttccttggtatccatcactgtgctca 814
Query: 615 gtttattttcaaggaatctgtttcaatactgaagacaaaagtgatgaacaaagcagtcgt 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 gtttattttcaaggaatctgtttcaatactgaagacaaaagtgatgaacaaagcagtcgt 874
Query: 675 g 675
|
Sbjct: 875 g 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_p06.g1 MSMg01no532_p06.g1 CHROMAT_FILE:
MSMg01no532_p06.g1 PHD_FILE: MSMg01no532_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:02 2005
(623 letters)
>mm_chr3_21124462_21125485
Length = 1024
Score = 1156 bits (598), Expect = 0.0
Identities = 619/626 (98%), Gaps = 3/626 (0%)
Strand = Plus / Minus
Query: 1 ttttgaactgtgattaactcatgtaaaagcccaaaaaggatacccaggtgaggcatgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ttttgaactgtgattaactcatgtaaaagcccaaaaaggatacccaggtgaggcatgtgt 670
Query: 61 tgggcttcaattcctggtaagttgtagtaatgtgctcaactttccttttgattatggagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tgggcttcaattcctggtaagttgtagtaatgtgctcaactttccttttgattatggagt 610
Query: 121 ccccacctccaccaaccccctcccatgacacttgcttgtaattattttcagacatgggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ccccacctccaccaaccccctcccatgacacttgcttgtaattattttcagacatgggtc 550
Query: 181 aagataaggtaaatggcctggggaactataattcaatgatctgtttagtttcactgatgt 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aagataagttaaatggcctggggaactataattcaatgatctgtttagtttcactgatgt 490
Query: 241 gtggctttggttctggggcgattaggaaccagggaatcatatcttactgttgtaaattcc 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gcggctttggttctggggcgattaggaaccagggaatcatatcttactgttgtaaattcc 430
Query: 301 acctctacatcaaggaagccaggcagaagtctgtttttt-aggggttaatttgcatatgg 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 429 acctctacatcaaggaagccaggcagaagtctgtttttttaggggttaatttgcatatgg 370
Query: 360 aatgcacacctgtatcctttgacaactctgaaaactactcactgaatgacaggggtttct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aatgcacacctgtatcctttgacaactctgaaaactactcactgaatgacaggggtttct 310
Query: 420 tagtagtcagccagatccagttgttagaacatctaacagagaaaccaggacatatgatca 479
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 309 tggtagtcagccagatccagttgtcagaacatctaacagagaaaccaggacatatgatca 250
Query: 480 gtaacaaagtgtgtgtacttgtgtgaattttattatcagagtatatgtgtatgtcagttg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gtaacaaagtgtgtgtacttgtgtgaattttattatcagagtatatgtgtatgtcagttg 190
Query: 540 aatgttcaattttgaattaagttatcaaact-tt-ccaaagtgctggaacactttgctaa 597
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 189 aatgttcaattttgaattaagttatcaaactattgccaaagtgctggaacactttgctaa 130
Query: 598 ttccagccatgcatgggtgattcagt 623
||||||||||||||||||||||||||
Sbjct: 129 ttccagccatgcatgggtgattcagt 104
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1024
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1014
Effective search space: 621582
Effective search space used: 621582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
