AATTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTTATTTTCTGTGTAGCTATGATGGTTTAGCTTGCTTATTT
GTCTAGTTGTTTGGAAGCTGTGTCCTCTATTGCAATTTTTTACATTTTTA
ACTCTAGTCATGACTTTTGGGGATGGAGCCATCAAATCTCGAGTTAATTT
GAATTCTAGTGCTCTGGGACACTATAAAATTCATAGCCAACTTCATGAAA
TTTTGAGAAAAATATTAATCATATAAATTAGTCTATTCCCAGTTCCCTCC
TTTGTTTCCTGCCATGCTCCTTTTCCACACGCAGCCCTTACAGGCTCCAT
TTGCTTTCTCACTACAGTTCTTTGTGATGATGTGGTTAACTGACTTGAAT
CAGCAGCCCCTTCAATGTAGGCTTTCTTTGTGAGATAGACACACATGACT
TCTTGATCTTAAATCTGGGTTTAGAGTAAGACCCTTGGAAAACTCTTCTC
ATGTGTTCTGACATGGTGCAATTAAACACCCAGCACAGTTTCTACTCAGA
ATTTCATGGGTTCTGCTTGAAATATTGGCCCGATTGGTCACCCATATAAG
TCGACTGCTATAATCAATCCATACATATTTTCACAATAGATTTTCCTTAA
CTGTTTGCCAAAGAATCACAAGAAAAAAAAGAAAAGGAGTAATCTGTCCT
AATCACTTTCTTTATACCTTCCTAAGTATTCTCTCTCTCTCCCTC

NNCCCGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAAACAGACTG
GGAGGAAGAAGCAGCTCATTATGAGAAAAAAGGGTACCAGCCAGGTAAAG
TGCTAGCTAATCAGTTAAGGAAGCCAAAAGCGGCTGGCGAAGGCCAGTTT
GCTGATTGGCCTCAGGGCAGTCGGCTTCAAGGTCCGCCCTATGCGGAGTC
CCCGCCCTGCGTAGTGCGTCAGCCCTGCGCAGAGAGACAATGCGCAGAGA
GGCAATGCGCAGACTCATTCATTCCCAGAGAGGAACAAAGGAAAATACAA
CAGGCATTTCCAGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCACGCTCC
GGTAGAATACGTACAGATTAAAGAACTTGCCGAGTCGGTCCGTAAATACG
GAACCAATGCTAATTTTACCTTGGTGCAGTTAGACAGGCTCGCCGGCATG
GCACTAACTCCTGCCGACTGGCAAACGGTTGTAAAAGCCGCTCTCCCTAG
TATGGGCAAATATATGGAATGGAGAGCTCTTTGGCATGAAGCTGCACAAG
CGCAGGCCCGAGCAAACGCAGCTGCTTTGACTCCAGAGCAGAGAGATTGG
ACTTTTGACTTGTTAACGGGTCAGGGAGCTTATTCTGCTGATCAGACAAA
CTACCATTGGGGAGCTTATGCCCAGATTTCTTCCACGGCTATTAGGGCCT
GGAAAG

Query= MSMg01no532_p18.b1 MSMg01no532_p18.b1 CHROMAT_FILE:
MSMg01no532_p18.b1 PHD_FILE: MSMg01no532_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:04 2005
         (620 letters)



>mm_chr3_139439107_139440126
          Length = 1020

 Score = 1168 bits (604), Expect = 0.0
 Identities = 613/616 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttattttctgtgtagctatgatggtttagcttgcttatttgtctagttgttt 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttatttgctgtgtagctatgatggtttagcttgcttatttgtctagttgttt 264

                                                                       
Query: 65  ggaagctgtgtcctctattgcaattttttacatttttaactctagtcatgacttttgggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaagctgtgtcctctattgcaattttttacatttttaactctagtcatgacttttgggg 324

                                                                       
Query: 125 atggagccatcaaatctcgagttaatttgaattctagtgctctgggacactataaaattc 184
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atggagccatcaaatctcaagttaatttgaattctagtgctctgggacactataaaattc 384

                                                                       
Query: 185 atagccaacttcatgaaattttgagaaaaatattaatcatataaattagtctattcccag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atagccaacttcatgaaattttgagaaaaatattaatcatataaattagtctattcccag 444

                                                                       
Query: 245 ttccctcctttgtttcctgccatgctccttttccacacgcagcccttacaggctccattt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttccctcctttgtttcctgccatgctccttttccacacgcagcccttacaggctccattt 504

                                                                       
Query: 305 gctttctcactacagttctttgtgatgatgtggttaactgacttgaatcagcagcccctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctttctcactacagttctttgtgatgatgtggttaactgacttgaatcagcagcccctt 564

                                                                       
Query: 365 caatgtaggctttctttgtgagatagacacacatgacttcttgatcttaaatctgggttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caatgtaggctttctttgtgagatagacacacatgacttcttgatcttaaatctgggttt 624

                                                                       
Query: 425 agagtaagacccttggaaaactcttctcatgtgttctgacatggtgcaattaaacaccca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agagtaagacccttggaaaactcttctcatgtgttctgacatggtgcaattaaacaccca 684

                                                                       
Query: 485 gcacagtttctactcagaatttcatgggttctgcttgaaatattggcccgattggtcacc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 685 gcacagtttctactcagaatttcatgggttctgcttgaaatattggccctattggtcacc 744

                                                                       
Query: 545 catataagtcgactgctataatcaatccatacatattttcacaatagattttccttaact 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 catataagtcgactgctataatcaatccatacatattttcacaatagattttccttaact 804

                           
Query: 605 gtttgccaaagaatca 620
           ||||||||||||||||
Sbjct: 805 gtttgccaaagaatca 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)