Query= MSMg01no533_b11.b1 MSMg01no533_b11.b1 CHROMAT_FILE:
MSMg01no533_b11.b1 PHD_FILE: MSMg01no533_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:13 2005
(561 letters)
>mm_chr3_83387336_83388296
Length = 961
Score = 1054 bits (545), Expect = 0.0
Identities = 554/557 (99%)
Strand = Plus / Minus
Query: 5 gaattctcacagatccggcttgtgggatcaggaagatatccaagtctgcaaagatgaaga 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gaattctcacagagccggcttgtgggatcaggaagatatccaagtctgcaaagatgaaga 702
Query: 65 aagaactcagagtcatagtagatcatgatctaagctaagctaaaataattgatcaaactc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aagaactcagagtcatagtagatcatgatctaagctaagctaaaataattgatcaaactc 642
Query: 125 aggtgactgaaaatcctaaaaggctgacataaaacgcacctaagttcaagatggtgtgtc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aggtgactgaaaatcctaaaaggctgacataaaacgcacctaagttcaagatggtgtgtc 582
Query: 185 attctgtgatgtactattggccaacaggcattaggctcttagaagttctggccatttaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 attctgtgatgtactattggccaacaggcattaggctcttagaagttctggccatttaaa 522
Query: 245 ttatttaccacatattagctcttgaattttaggcacatcatcgaatctctatgatactct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ttatttaccacatattagctcttgaattttaggcacatcatcgaatctctatgatactct 462
Query: 305 tttctttgattgtgtagtaagactggcaagccttaccgtctcataagggtcaaggcatgg 364
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 461 tttctttgattgtatagtaagactggcaagccttaccatctcataagggtcaaggcatgg 402
Query: 365 aaaatccttggtgaggctggctcttggcatataggattggggccactgtgacaataattc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aaaatccttggtgaggctggctcttggcatataggattggggccactgtgacaataattc 342
Query: 425 tgtcaaagctctcttaatgcatttccttcccattcttctttgtcaccagttggcaattac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgtcaaagctctcttaatgcatttccttcccattcttctttgtcaccagttggcaattac 282
Query: 485 acgctacagaaaatgtacacagaaggggcttgtttgggttaccgtgtagctgggtgggag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 acgctacagaaaatgtacacagaaggggcttgtttgggttaccgtgtagctgggtgggag 222
Query: 545 ggagctatggctagtgg 561
|||||||||||||||||
Sbjct: 221 ggagctatggctagtgg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_b11.g1 MSMg01no533_b11.g1 CHROMAT_FILE:
MSMg01no533_b11.g1 PHD_FILE: MSMg01no533_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:13 2005
(468 letters)
>mm_chr3_83262692_83263558
Length = 867
Score = 688 bits (356), Expect = 0.0
Identities = 420/470 (89%), Gaps = 47/470 (10%)
Strand = Plus / Plus
Query: 1 tcagggactctcttcccaactgctgccaccaaattttctttagaaaatttctttctacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagggactctcttcccaactgctgccaccaaattttctttagaaaatttctttctacat 260
Query: 61 tgaaaacatgcccagattttggaaagcaacaagcaatcaggtatattttttttcctctgt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 tgaaaacatgcccagattttggaaagcaacaagcaatcaggtatattttttt-cctctgt 319
Query: 121 tttttgccaatctcagttgactatttaaagtaaactaatttttcccacttaaattgtaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttttgccaatctcagttgactatttaaagtaaactaatttttcccacttaaattgtaaa 379
Query: 181 ggtctatccaacagtggtttctctctctctctctctctctctctctctctctctctctct 240
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggtctatccaacagtggtttctctctctctctctctctctct------------------ 421
Query: 241 ctctctctctctctctccccctgtttatataatttaggtgtgtgcatatgtgtagacggt 300
||||||||||||||||||||||| |||||||||| |||
Sbjct: 422 ----------------------gtttatataatttaggtgtgtgcgtatgtgtagatggt 459
Query: 301 atgtatgtttggtgtgtgcatattcaagcatatgatatgctttgtgctaagtgatatata 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 460 atgtatgtttggtgtgtgcatattcaagcatatgatatgttttgtgctaagtgatatata 519
Query: 361 tatatagatatatatttaaatatacatatatataatgtgtgtgt--atgcatgtaactgt 418
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 520 ta----gatatatatttaaatatacatatatataatgtgtgtgtgtatgcatgtaactgt 575
Query: 419 gaatgtgtgtaaacaattcttcaagcctagactggtgagcacaaattaag 468
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gaatgtgtgtaaacaattcttcaagcctagactggtgagcacaaattaag 625
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 867
Length adjustment: 10
Effective length of query: 458
Effective length of database: 857
Effective search space: 392506
Effective search space used: 392506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
