BAC Information

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BAC

Clone NameMSMg01-533H21
Chromosome3 (Build37)
Map Location 20,266,633 - 20,266,977
singlet/doubletsinglet
Overlap genenone
Upstream geneDnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
Downstream geneEG665094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533H21.T7 (MSMg01no533_h21.b1)MSMg01-533H21.TJ (MSMg01no533_h21.g1)
ACCAG601402AG601403
length734775
length of high quality
(start - end)		661 (54 - 714)609 (74 - 682)
definitionCHROMAT_FILE: MSMg01no533_h21.b1 PHD_FILE: MSMg01no533_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:43 2005CHROMAT_FILE: MSMg01no533_h21.g1 PHD_FILE: MSMg01no533_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGA
GGATCCGCGGAATTCCTCATCTTTCCAGACTTTTAACATGAATGGGTGTT
GGATTCTGTCAAATGCTTTCTCCACATCTAATGAGATAATCATGTGGTTT
TTGTCTTTGAGTTTGTTTATATAGTGTATTACATTGATGGATTTCCATAT
ATTGAACCATCCCTGCATCCCTGGGAAGAAGCCTACTTGATCATGATAGA
TGATCATTTTGATGTGTTCTTGAATCCAGTTTGTGAGAATTTTATTGAGT
ATTTTTTATCAATATTCATAGGGGAAATTGGTTTGAAATTCTCTTTCTTT
GTTGGATATTTGTATGGCTTAGGTATCAGAGTAATTGTGGCTTCATAGGT
CAAACTGAGTAGAGTACCTTCTGTTTCTATTTTGTGGAATAGTCTGAGGA
GTATTGGAATTAGGTCCTCTTTGAGGTCTGAAAGAACTCTGAATGAAACC
CATCAGGTCCTGGCCTTTTTTTGGTTGGGAGACTATTAATGACTGTTTCT
ATTTCTTTAGGGGACATAGGACTGTTTAGATCATTAATCTGATCCTGATT
TATCTTTGGTACCTTGTATCTGTCTACAAAATTGTCCATTTCATCCAGGT
TTTCTAGTTTTGTTTGATATAGACTTTGTAGTAGGATCTGATGTTTTTTT
TTTTTTTTTTGTTTGTTTGTTTGTTTGTTTGGTT

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGATCTGTACCCTTATTTCA
TTGGATTATTTATTTTCTTGACACCTAGTTTTGTGAGTTGTTTATATATT
TCTGATATTAGTACTTTATTGAATATGGAGTTGCTAAAACATCTCTTCCC
ACTCTCTAGGCTGCTACTTTTACCTTTGCTTTACAGAAGGATTTCGGTTT
CATGAGGTCCTATGCATTAGTTGTTGATCTTAGTGCCCATGCGTGCTCAT
GATGTCCTGTTCAGAAAGTCTTCTGTGCTAATGTATTCAAGAGTATTTCA
CACCAGGCAGTGATGGCACATTCCTTTAATCCCAGCATTTGCAAGGCAGA
AGCAGGCAGATTTCTGAGTTCAAGGCCTGCCTGCTATAGAGTGAGTTCCA
GGACATCCAGGGCTATACAGAGAAACCCTGTCTCGGGAAACAAAACAAAA
CAAAAAACAAAAAGAAAAATAAAAAAATAAATAAAAACCTACAAATACAA
AAGGCTTGAGTTCCTATTTTGTCTGTAGACTTTTAAATTTTCCTTTTTGT
TTTTCTAACTACAAAGTTGGATACAAGTCAAGAGACCGAAGGTACTTATA
TGACATTACTGACTTTCTAATACGTTAACAAGAATAGTTGTAATGAATGA
TATTCAAGAAGCATTTTAAAAAATAGATGAAAATCTAACCTTTCATTCTA
TGCAACCCTATAATTAATCAATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_h21.g1 MSMg01no533_h21.g1 CHROMAT_FILE:
MSMg01no533_h21.g1 PHD_FILE: MSMg01no533_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:43 2005
         (609 letters)



>mm_chr3_20265969_20266977
          Length = 1009

 Score =  629 bits (325), Expect = 0.0
 Identities = 341/347 (98%), Gaps = 2/347 (0%)
 Strand = Plus / Minus

                                                                        
Query: 263  ttcaagagtatttcacaccaggcagtgatggcacattcctttaatcccagcatttgcaag 322
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 1009 ttcaagagtatttcacaccaggcagtgatggcacatgcctttaatcccagcatttacaag 950

                                                                        
Query: 323  gcagaagcaggcagatttctgagttcaaggcctgcctgctatagagtgagttccaggaca 382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949  gcagaagcaggcagatttctgagttcaaggcctgcctgctatagagtgagttccaggaca 890

                                                                        
Query: 383  tccagggctatacagagaaaccctgtctcgggaaacaaaacaaaacaaaaaacaaaaaga 442
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 889  tccagggctatacagagaaactctgtctcgggaaacaaaacaaaacaaaaaacaaaaaga 830

                                                                        
Query: 443  aaaataaaaaaataaataaaaacctacaaatacaaaaggcttgagttcctattttgtctg 502
            ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829  aaaataaaaaaataaa--aaaacctacaaatacaaaaggcttgagttcctattttgtctg 772

                                                                        
Query: 503  tagacttttaaattttcctttttgtttttctaactacaaagttggatacaagtcaagaga 562
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771  tagacttttaaaatttcctttttgtttttctaactacaaagttggatacaagtcaagaga 712

                                                           
Query: 563  ccgaaggtacttatatgacattactgactttctaatacgttaacaag 609
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711  ccgaaggtacttatatgacattactgactttctaatacgttaacaag 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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