BAC Information

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BAC

Clone NameMSMg01-533L13
Chromosome3 (Build37)
Map Location 122,890,816 - 123,078,897
singlet/doubletdoublet
Overlap geneSynpo2, Sec24d, G430022H21Rik
Upstream geneLOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2
Downstream genePrss12, EG668804, Ndst3, LOC100043333, EG668809, Tram1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533L13.T7 (MSMg01no533_l13.b1)MSMg01-533L13.TJ (MSMg01no533_l13.g1)
ACCAG601577AG601578
length739719
length of high quality
(start - end)		685 (55 - 739)264 (84 - 347)
definitionCHROMAT_FILE: MSMg01no533_l13.b1 PHD_FILE: MSMg01no533_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:00 2005CHROMAT_FILE: MSMg01no533_l13.g1 PHD_FILE: MSMg01no533_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,078,334 - 123,078,897)(122,890,816 - 122,891,075)
sequence
CCCTAATTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTGACGCACATTCTATAAAGTAGAGATGCCCTCTTCT
GGGGCTGGGGGTTCTTGAAACAGCCTTACAAATGCCTGGGACTGGGAACA
CTTGAAACTGCCTTGCAAACGCCTGTCTCATGGTGCTTTGCTATACGTGT
CTTGCATTTTTCTTCAGCGTTGGGGAGTCACTATACTTCCTGGGCACTCA
GTAGAGCTTGCTGGGGACAAGTCTGGTGCTCTCCCTGTGAGCTGGATGAC
AGGAAAATTCTTGCCTTCAGAGATGACGATGACTTCATTATAGCCTGTGA
CTTTTCAGTTTAAGCATTAAAAGCCCCCAAGCCTTAAAAACAAAAGAAAA
AAGTATCTTGGATTGGTTCTGGTGAGATAGCCGGCTGTGAGAAAGCTTCT
TGTCCAGGGCTGCATGCCTGATGATATGAGTTCAAAGCCCACAGCCTGGA
TAGAGGTGGAAGGAGAGAGCTCACTGCACAAAGTTGCTCTCTGACCACCA
CATGCATATCATGGCCTGTACACCACCCAGTAATAATAAATGTTTTCTTC
CAAAGTGTCTTTGAACTTAAAACTTCCATACTGTGTGAAAATAACTTCAT
CAAAGGCTAGTAGTAAATCTCATTAGGTAGTGTAAAAACACTGTCAATAT
AAATATTTTTATTAATGAACAAGCTAATAAAGTGAAATN

TTTTNTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCGCCCAGCAACAGC
TGTGGGGAAGCCTGTTGGTCAGATTTCCTTTAGGGCATGCTTCACATTTC
AATCCTGGGAGGCTGTCACTGATACACTCACAGTAAAGAGAGAGCTGTGC
GTTCAGATTACAGAGCGGATCTGAACACGGCATCCTCACGGACGCCTGTT
CTTCTGTTTCCCTAAGAATTCCCTTTAAAATAAAATGAGCTCCACATATG
GAACTTGACACTTCCAAATTATTTAGAATCTCAAAAATTAAGCTCTTGAG
CACCCANGTGGGGACAGTCCTATGTGAAGGGCTAGAGAGGTAACCAATTC
AAAACACATATTGCGTACACACTGTGGCTGTGGAGACTTGAAAGAATCTG
TGGCCGGCTTCTTTCTGAAAAGGGCTGTAAAGTATCCCCCCCGGGGGGAA
TTTCCCTTTCTCAACCTTTGGGTTAAAAAAGGGAAGTTTCCCACCCAAGG
GGGGGCCCTCCCGGGCCCCTGGGGTTACAATTCCTTTTCTCCCCAGGGGG
GGCCCCAAAATTTCTCCCCAAGATGGGCCCCTTAAAAGGGGAGAAAAAAC
AACTCCCCCTTTTTTTAAAAATTTCTTCCCAACCCTTTTTGGTATCAGTT
GGCTCTTTAAATGGTGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_l13.b1 MSMg01no533_l13.b1 CHROMAT_FILE:
MSMg01no533_l13.b1 PHD_FILE: MSMg01no533_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:00 2005
         (685 letters)



>mm_chr3_123078334_123079418
          Length = 1085

 Score = 1060 bits (548), Expect = 0.0
 Identities = 560/564 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgacgcacattctataaagtagagatgccctcttctggggctgggggttcttga 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaattctgacgcacagtctataaagtagagatgccctcttctggggctgggggttcttga 505

                                                                       
Query: 65  aacagccttacaaatgcctgggactgggaacacttgaaactgccttgcaaacgcctgtct 124
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aacagccttgcaaatgcctgggactgggaacacttgaaactgccttgcaaacgcctgtct 445

                                                                       
Query: 125 catggtgctttgctatacgtgtcttgcatttttcttcagcgttggggagtcactatactt 184
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 444 catggtgctttgctatacgtgtcttgcatttttcttcagcgttagggagtcactatactt 385

                                                                       
Query: 185 cctgggcactcagtagagcttgctggggacaagtctggtgctctccctgtgagctggatg 244
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 384 cctgggcactcagtagagcttgctgggggcaagtctggtgctctccctgtgagctggatg 325

                                                                       
Query: 245 acaggaaaattcttgccttcagagatgacgatgacttcattatagcctgtgacttttcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acaggaaaattcttgccttcagagatgacgatgacttcattatagcctgtgacttttcag 265

                                                                       
Query: 305 tttaagcattaaaagcccccaagccttaaaaacaaaagaaaaaagtatcttggattggtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttaagcattaaaagcccccaagccttaaaaacaaaagaaaaaagtatcttggattggtt 205

                                                                       
Query: 365 ctggtgagatagccggctgtgagaaagcttcttgtccagggctgcatgcctgatgatatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ctggtgagatagccggctgtgagaaagcttcttgtccagggctgcatgcctgatgatatg 145

                                                                       
Query: 425 agttcaaagcccacagcctggatagaggtggaaggagagagctcactgcacaaagttgct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 agttcaaagcccacagcctggatagaggtggaaggagagagctcactgcacaaagttgct 85

                                                                       
Query: 485 ctctgaccaccacatgcatatcatggcctgtacaccacccagtaataataaatgttttct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  ctctgaccaccacatgcatatcatggcctgtacaccacccagtaataataaatgttttct 25

                                   
Query: 545 tccaaagtgtctttgaacttaaaa 568
           ||||||||||||||||||||||||
Sbjct: 24  tccaaagtgtctttgaacttaaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no533_l13.g1 MSMg01no533_l13.g1 CHROMAT_FILE:
MSMg01no533_l13.g1 PHD_FILE: MSMg01no533_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:00 2005
         (264 letters)



>mm_chr3_122890616_122891279
          Length = 664

 Score =  472 bits (244), Expect = e-137
 Identities = 256/260 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcgcccagcaacagctgtggggaagcctgttggtcagatttcctttagggcatgcttc 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 201 tgtcgcccagcaacagctgtggggaagtctgttggtcagatttcctttagggcttgcttc 260

                                                                       
Query: 61  acatttcaatcctgggaggctgtcactgatacactcacagtaaagagagagctgtgcgtt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 acatttcaatcctgggaggctgtcactgatacactcacagtaaagagagagctgtgtgtt 320

                                                                       
Query: 121 cagattacagagcggatctgaacacggcatcctcacggacgcctgttcttctgtttccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagattacagagcggatctgaacacggcatcctcacggacgcctgttcttctgtttccct 380

                                                                       
Query: 181 aagaattccctttaaaataaaatgagctccacatatggaacttgacacttccaaattatt 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 aagaattccctttaaaataaaatgagctccgcatatggaacttgacacttccaaattatt 440

                               
Query: 241 tagaatctcaaaaattaagc 260
           ||||||||||||||||||||
Sbjct: 441 tagaatctcaaaaattaagc 460


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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