BAC Information

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BAC

Clone NameMSMg01-534C08
Chromosome3 (Build37)
Map Location 33,750,441 - 33,750,756
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp13, Pex2, EG545512, LOC100041058, Ttc14, Ccdc39
Downstream geneLOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636, EG622074, Sox2, LOC100041108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534C08.T7 (MSMg01no534_c08.b1)MSMg01-534C08.TJ (MSMg01no534_c08.g1)
ACCAG601901AG601902
length1,017726
length of high quality
(start - end)		---628 (71 - 698)
definitionCHROMAT_FILE: MSMg01no534_c08.b1 PHD_FILE: MSMg01no534_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:32 2005CHROMAT_FILE: MSMg01no534_c08.g1 PHD_FILE: MSMg01no534_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATATTGTGTGTATAGTATTTCATAACCAACTCAAAAAGAAGATAAGCAC
GTCAACACATTAGCGTTATACATAACACGTCTTCTGTATTATTCGTAGAA
GGATGTTGAAGAGCATATATTCCGTGTCATGATCTTGACGCCCCACTTTT
TTCAACTGTGGGTTTAATATTGATATTATCTAGAGAATACCACCCTCTCT
CTGGAGCTCACGTTTTATATCGTTGCTCAGGGCATAACTAGGTTCTCCCT
CTATTCCGCGATATTATATGAGTGTGGTAACAAGAGTTCCCTTTTCCTCC
ACTCTACACTGTTGGGAGGGGTCTTTTTTCTGGTCTTCCATCGGAATGGG
GCGGTCTTTTTGGTCCCTAGAACTAATTACCTTCGTGGAAGTTTTCTATT
ATACACGTCCAACATTTTGGTGTCTCGCTTTTTTGGACATTCGTATATTC
TTACAGCATTATCTCTCTTGTGGCGTGGTTTTTCATTTTGTAAAGGGAAC
TCTTCTTCTTACCTCTTTGCGGTGCCGCCATTTAATTTATTTCACAGTAG
GGCTATATTTCTCCTTCTCCATACTTATTCCTCCGCCTCTTTATATAATA
CAGTAGTTTCACCACGAGGCGTGTTTCGCCGCGGGTGAGCACATTATCAT
GTCGGAGGAGATGTCTACCTTCTTATGCAGCCTTAACTCACGCTTCTGAT
GTACCACCTATTACTCGCCTTTCACACCCATTTTCAATCCTGCTCTGGTA
TTCCACATCTAAACTATGTTGTATGAGTGATGGCACATGACCACACTATT
TTCGTGCTTTTTACACACCACGCATACAATTTATTTCTTACCGTCCGTTC
GTGGTGTTTTCAAACCTTCTCCCATTATATTGTCCTCCCGCATCACATAA
CGGAGTGCGTATGTTATTCTCGTTTTCTCATAGGGCGGGCGCTTGCCCGT
CTTCTTTTACTCGCTCCCATTATCTTGTCGCGGCGTCCACTACTACTCGT
GTGCCCTCTTTGGTTAG

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTTGCAATTTTTTTTAAAGTGCTTGTTGT
CTTCTAAGAATCAAGGGCTGTGGTAATGGGATGCTGGCTCATGGGATAAT
CAAAAGGGAACTGGGGTAAAGACTGAATTGATATCTAAATCAATAACTGG
GCTTTTGATGTGCAAGAGATGAGCTATCCAGAGAATTTTTAGTACAGAAA
AAAAAAAAGGCTGTCTAGAGTAGAAAAGAATACAGAAAGCAGTCTGAAAA
GCTGTCTTAAGCAGAGAGCTGTCTGGAGATCTCCAGAGAAAGCAGAACAT
AGAGAGGGCAAATCCAGCAAGCTGTCTTGAGGGGGACATATGCCTTCAGC
TTGAACCCACAATTTGACTTTAAGTTGTTTGTTTTCAACACTCCCAGACA
CCCCTTCTCTCAGAATCCCTTTCCAAGCCGAGGCTAGTCCTTAGCATGTG
CACATACACACATACCCAATGCACACACATATTCATGCATACCTATATTC
ACATGTACACACAACACTGTGATACACACACAGCTCACTGTGACCTAATT
TCATCATTGAACATAAACATACACGGACTGCACTCAGGTACTTAGTACTT
CTGCAGAGCAGTGGCTGACACTGGAAAAAGAAATCTCGTGACTATGTATT
TCAGAAAAGATATCAGGAAGGATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_c08.g1 MSMg01no534_c08.g1 CHROMAT_FILE:
MSMg01no534_c08.g1 PHD_FILE: MSMg01no534_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:32 2005
         (628 letters)



>mm_chr3_33749729_33750756
          Length = 1028

 Score =  497 bits (257), Expect = e-144
 Identities = 299/317 (94%), Gaps = 10/317 (3%)
 Strand = Plus / Minus

                                                                        
Query: 321  tgccttcagcttgaacccacaatttgactttaagttgtttgttttcaacactcccagaca 380
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 tgccttcagcttgaacccataatttgactttaagttgtttgttttcaacactcccagaca 969

                                                                        
Query: 381  ccccttctctcagaatccctttccaagccgaggctagtccttagcatgtgcacatacaca 440
            ||||||||||||||| |||||||||||| ||||||||||||| |||||||  ||||||| 
Sbjct: 968  ccccttctctcagaacccctttccaagctgaggctagtccttggcatgtgtgcatacacc 909

                                                                        
Query: 441  catacccaatgcacacacatattcatgcatacct--ata------ttcacatgtacacac 492
            ||||||||||||||||||||||||||||||||||  |||      |||||||||||||||
Sbjct: 908  catacccaatgcacacacatattcatgcatacctacatacctaccttcacatgtacacac 849

                                                                        
Query: 493  aacactgtgatacacacacagctcactgtgacctaatttcatcattgaacataaacatac 552
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 848  aacactgtgatacacacacagctcactgttacctaatttcatcattgaacataaacatac 789

                                                                        
Query: 553  acggactgcactcaggtacttagtacttctgcagagcagtggctgacactggaaaaagaa 612
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788  acggactgcactcaggtacttagtacttctgcagagcagtggctgacactggaaaaagaa 729

                             
Query: 613  atctc-gtgactatgta 628
            ||| | |||||||||||
Sbjct: 728  atc-ctgtgactatgta 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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