BAC Information

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BAC

Clone NameMSMg01-534F03
Chromosome3 (Build37)
Map Location 137,684,446 - 137,684,828
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039447, Emcn, EG229862, Ddit4l, LOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1
Downstream geneEG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1, Tspan5, LOC620771, Rap1gds1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534F03.T7 (MSMg01no534_f03.b1)MSMg01-534F03.TJ (MSMg01no534_f03.g1)
ACCAG602033AG602034
length772730
length of high quality
(start - end)
389 (38 - 426)655 (73 - 727)
definitionCHROMAT_FILE: MSMg01no534_f03.b1 PHD_FILE: MSMg01no534_f03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:48 2005CHROMAT_FILE: MSMg01no534_f03.g1 PHD_FILE: MSMg01no534_f03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTGTTGTTTCGTGTACTATTATTTGGAGAGGATCCGCGGAATTCAGTA
GGAGGCTCCCAATGCAGGAATCTGAGAATGTTTTCTTTTTAAAAAAGCTT
TACTTTTTACTTTCTGAAAGGAAACTACATTTTTTTCTAAGTCAAAATGG
TATGGAATAGGAGACCAGAGTCCACTTTCCCATTTAATTTGGTCTCCCCT
CTATAGACAGTTTCTATGATGCCTCGTTAATGTTTCTCTGTACAAATGTT
AATGACAACAAACGTACCCAATAGTTTCTCACATTCCCAACTAAAATTAA
TAGTGATATTTAATATTCAACTTAAGTTATTTGAGGTGTATAAGAAATCC
TTAAAATTTTATGAAATTTCCTTTATACAGTAGTATTGTACAGTGGTGTG
TGTGTGTGTGTGTGTGTGTTGTGTGTGTGTGTGTATCTGGAAAGTTTTTC
GACCTGTTTTTTTCATTTTTTCCGCGGTTCCCCTTGTGTATTAAATCCTT
GTTTTTTTTTATCTTATTGTAATGTAAATCACTTTGGCGTTGAGCGCGTT
TCATTTTATTATTGAATGTTTAAATCTCGTCTAGGAATTTGGTTGTTTTC
TCTAGTCAAGTTTTTTTGCCCAATCTCAACCCGTTGTTAATTTGTTATGC
TTTCGTTTGGCGGTACTCGTTTTTGATTTTCAAATTATCATCGTTCCCAT
TTATCTATCTTTATCCGCCCTCGTCCCCTTTCCATTGGGTAAAGTAATTA
TGCTTTTCCATTTGCCAACATG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGCCAATTTCTGAGTATATCTATCCCAA
TTATACATTCTGGAACTGGGGAAATCACCACAGGATGTGTCCGGGGACCT
ACTGGACCTACTGTGAGTCGGACATCAGTCAAAACTCCATTAATCACCTA
CCCTCCATAAGCCCCTACTTTAACTGGAGGGCCACAATGTTTCTTGGGAT
CCCCTGGGATCAGTGTCAACTCAGAACCAGTATCCAGCAGACCCCGAAAA
GTCTGATTATTTCCTTTTCCCCAGTGTACAGTTACCCTTGTAAAAGGCCG
TAGGTCCCTCTGGGGAAGAACTGGAGAAAGGGTAACAGCAAAACCTTTAG
GTGTCCTATCAAGATCCTTCCTCAGCGGAACCTGGACACCCCTTCATTCA
AGGGGTTCTGGATCTGCAAACTGTCTCAAGTCTGGAAATTGATTCACTGG
CCGAGATTGCTGTTTACCATGATCTAATGTAGCCTTTCTTTCATTGGGCT
GTTTACCACGATCTAATGTAGCCTTTCTTTCATTTGTTTGAGAATTTTTC
TGCTTATACAGATCAAACAAATATGCAGTAGGCTTCCTATGTATTTCATT
TCTGGAAACACCATGATTGGTTAGCCAGTACCAAAGGTCCAACCGAGTCG
TGCCATTATAAATTTCACCTCTCCTGTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_f03.b1 MSMg01no534_f03.b1 CHROMAT_FILE:
MSMg01no534_f03.b1 PHD_FILE: MSMg01no534_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:48 2005
         (389 letters)



>mm_chr3_137684240_137685027
          Length = 788

 Score =  696 bits (360), Expect = 0.0
 Identities = 378/384 (98%), Gaps = 2/384 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   ttcagtaggaggctcccaatgcaggaatctgagaatgttttctttttaaaaaagctttac 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ttcagtaggaggctcccaatgcaggaatctgagaatgttttctttttaaaaaagctttac 266

                                                                       
Query: 67  tttttactttctgaaaggaaactacatttttttctaagtcaaaatggtatggaataggag 126
           |||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 267 tttttactttttgaaaggaaactaca-ttttttctaagtcaaaatggaatggaataggag 325

                                                                       
Query: 127 accagagtccactttcccatttaatttggtctcccctctatagacagtttctatgatgcc 186
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 acaagagtccactttcccatttaatttggtctcccctctatagacagtttctatgatgcc 385

                                                                       
Query: 187 tcgttaatgtttctctgtacaaatgttaatgacaacaaacgtacccaatagtttctcaca 246
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 386 tcgttaatgtttctctgtacaaatgttaatgacagcaaacgtacccaatagtttctcaca 445

                                                                       
Query: 247 ttcccaactaaaattaatagtgatatttaatattcaacttaagttatttgaggtgtataa 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttcccaactaaaattaatagtgatatttaatattcaacttaagttatttgaggtgtataa 505

                                                                       
Query: 307 gaaatccttaaaattttatgaaatttcctttatacagtagtattgtacagtggtgtgtgt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gaaatccttaaaattttatgaaatttcctttatacagtagtattgtacagtggtgtgtgt 565

                                   
Query: 367 gtgtgtgtgtgtgtgt-tgtgtgt 389
           |||||||||||||||| |||||||
Sbjct: 566 gtgtgtgtgtgtgtgtgtgtgtgt 589


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 788
Length adjustment: 9
Effective length of query: 380
Effective length of database: 779
Effective search space:   296020
Effective search space used:   296020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)