Query= MSMg01no534_i01.b1 MSMg01no534_i01.b1 CHROMAT_FILE:
MSMg01no534_i01.b1 PHD_FILE: MSMg01no534_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:02 2005
(667 letters)
>mm_chr3_42001108_42002170
Length = 1063
Score = 1058 bits (547), Expect = 0.0
Identities = 632/669 (94%), Gaps = 18/669 (2%)
Strand = Plus / Minus
Query: 12 accaggggtccaccactggaaaattggtgcacctttcagtgaatttaggatgctagattc 71
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1063 accaggggtccaccactggaagattggtgcacctttcagtgaatttaggatgctagattc 1004
Query: 72 cgaggtaaccgctgcagagcctgggtttatgagagtgtgcccccatctagctgtagaaat 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 cgaggtaaccgctgcagagcctgggtttatgagagtgtgcccccatctagctgtagaaat 944
Query: 132 ttgggattgcttataggtttggcagcagtcagtcacaagggttagatgactaggactgtg 191
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 943 ttgggattgcttataggtttggcagcagccagccacaagggttagatgactaggactgtg 884
Query: 192 agcaagttccacagcaagcaaactgagagaagtcaggtggcagccacatggagttagcca 251
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 883 agcaagttcgacagcaagcaaactgagagaagtcaggtggcagccacatggggttagcca 824
Query: 252 tggaggtggccagatgaatagcaggagatagtgtggattttttt-aattaatacatacaa 310
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 823 tggaggtggccagatgaatagcaggaggtagtgtggattttttttaattaatacatacaa 764
Query: 311 cacagggcaacactggatgaagtaagtaagataaaagaagagcaaacgctttcaaaaatg 370
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 cacagggcaacactggataaagtaagtaagataaaagaagagcaaacgctttcaaaaatg 704
Query: 371 tcaaaacacagaaaatctgcagaatccatgacacaaggaactgtgtagatgattgctccc 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 703 tcaaaacacagaaaatctgcagaatccatgacacaaggaactgtgtagatgattgttccc 644
Query: 431 ttggtaccatgccatctcaacatagctctgagggttatcttgacttcagacctcctccaa 490
||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ttggtgccatgtcatctcaacctagctctgagggttatcttgacttcagacctcctccaa 584
Query: 491 agaatcacaacaaacgccaccaaaacacctccatttgggtgacacccattgctgcatggc 550
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 agaaagacaaca----ccaccaaaacacctccatttgggtgacacccattgctgcatggc 528
Query: 551 tcctccttcaagctcc-----------tccttcaagctatccctgtggtttcctcttttg 599
||||||||||||||| | | || |||||||||||||||||||||||||
Sbjct: 527 tcctccttcaagctcagaggtgtaagatgcagcatgctatccctgtggtttcctcttttg 468
Query: 600 ctgctcagacctgtacaatccata-ccttcagcaagccttccttgaatgacaataatctg 658
|||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||
Sbjct: 467 ctgctcagacctgtacaatcca-atccttcagcaagccttctttgaatgacaataatctg 409
Query: 659 agttgtcat 667
|||||||||
Sbjct: 408 agttgtcat 400
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1063
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1053
Effective search space: 691821
Effective search space used: 691821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_i01.g1 MSMg01no534_i01.g1 CHROMAT_FILE:
MSMg01no534_i01.g1 PHD_FILE: MSMg01no534_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:02 2005
(658 letters)
>mm_chr3_41858664_41859720
Length = 1057
Score = 1164 bits (602), Expect = 0.0
Identities = 644/658 (97%), Gaps = 1/658 (0%)
Strand = Plus / Plus
Query: 1 agagattcacctacttctgccttccagtgttgggattaaaggcatgtgccactgccaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagattcacctacttctgccttccagtgttgggattaaaggcatgtgccactgccaaca 260
Query: 61 cgtggcacatggcagatgtattttcagtgggaaataaaagaacaaaatttacttatggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtggcacatggcagatgtattttcagtgggaaataaaagaacaaaatttacttatggca 320
Query: 121 aaaagctactttttagataatatctttgatgtatctcccttgaggttccattcttagagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaagctactttttagataatatctttgatgtatctcccttgaggttccattcttagagc 380
Query: 181 tatagttatgcgacacaatctctctgtctcaaataaaataaacagaacattgttagactt 240
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 381 tatagttatgccacacaatctctctgtctcaaatagaataaacagaacattgttagacct 440
Query: 241 ctgtcatatttcatttttaaaggatgactagagtaatagcaaaattacaagagaatgaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtcatatttcatttttaaaggatgactagagtaatagcaaaattacaagagaatgaaa 500
Query: 301 atatgtgcatatgtattttcttgaatgcattatgacctggtttacagattgcactatggt 360
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 atatgtgcatatgtattttcttgaatgcattatgacctggtttacagcgtgcactatggt 560
Query: 361 ttatgttcacttaacaatcataagttagggtttgcaagcatggtcttcaggaacggagct 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 ttatgttcacttaacaatcataagttagggtttgcaa-catggtcttcaggaacggagct 619
Query: 421 agaagaatcgcaagttcaagacctgtgtgggctgtagagtgaaatcaagaccaatctagg 480
||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||
Sbjct: 620 ggaagaatcgcaagttcaaggcctatgtgggctgtagagtgaattcaagaccaatctagg 679
Query: 481 caacctatggtaaccctctctcaaaataataataccaaggatataggtgagtagtagaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 caacctatggtaaccctctctcaaaataataataccaaggatataggtgagtagtagaat 739
Query: 541 gattacttacatagtacacatacctagtacacatactgctctaggtctagtccacaggat 600
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 740 gattacttacatagtacacatatctagtacacatactgctttaggtctagtccacaggag 799
Query: 601 caaacaaaacaaaacaaagcaaaggagaacaaagcaaactgagtcaaacaaaaatcaa 658
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 800 caaacaaaacaaaacaaagcaaaggagaacaaagcaaacggagtcaaacaaaaatcaa 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1057
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1047
Effective search space: 678456
Effective search space used: 678456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
