BAC Information

Click to search

BAC

Clone NameMSMg01-534L23
Chromosome3 (Build37)
Map Location 51,990,792 - 51,991,280
singlet/doubletsinglet
Overlap geneLOC671890
Upstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3, LOC433587, LOC100039788
Downstream geneOlfr1398-ps1, Foxo1, LOC100039762, LOC100039832, Cog6, Lhfp, LOC100039808
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534L23.T7 (MSMg01no534_l23.b1)MSMg01-534L23.TJ (MSMg01no534_l23.g1)
ACCAG602360AG602361
length752766
length of high quality
(start - end)
471 (38 - 508)491 (69 - 559)
definitionCHROMAT_FILE: MSMg01no534_l23.b1 PHD_FILE: MSMg01no534_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:22 2005CHROMAT_FILE: MSMg01no534_l23.g1 PHD_FILE: MSMg01no534_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTGGGGTCGCTATACGACTCCTATTTTCAGAGGATCCGCGGAATTCTC
AGCTCCTCCTGCACCATGCCAACCTGGACGCTGCCATGCTCCCGCCTTGA
TAATAACGGACTGAACCTCTGAATCTGTAAGCCAGCGTCTTAGTTTATTG
CTGTGAACAGATACCATGACCAAAGTAACTCTTTGGTCATGGTCAAAGGA
CAACATTTAATTGGTGGACTGGCAAGATGGCTCACTGGGTAGAGGCACCC
ACTAGAGCCAACTGACTCCTGCACGTGGTCATCTGACCTTCAATATGTGC
AGTGGCATGTGCATGCACGCACACACCAAATAAAATGTACAAACAAGGCA
AAAAGCAATAGGAAGACAAATGTATGAACACCCAAACATGTTTAAGTACA
TACATATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATATGTG
TAGTAAAATCAGACTGTGGGGAAAGAAAACACTGGGATTGGTTGGTTTTG
TTTTGTTTGGNGGGGGNNNNTNNNNNNNNNNNNNNNNNNNNNTNNNNNTN
NNNTTTTTTTTTTNTTNTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTT
TTNTTTTTTTTTTTTTTTTTTTTTTNNNTTTTTNTTTNTTTNTTTTTTTT
TTTNTTTTTTTTTTTTTNTNTTNTTTTTTTTTTTTTTNTTGTTNNNTTTT
TTTTTTTTTTTTNTTTTTNTTTNNNTTTTNTTGTTTTTTTTTTTTTNTTG
TT
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTATGACAGAGAGCAGAACACAGCACAATGCCA
TCATCATGCAGTGAGTTAGCTGGCCTCAACCCCCCGCACAACCTCCCCCA
CTCCGTCCCCTCCCGAACCAGACTGATGCCCAGAGCCCCAGCATTTCAAC
CCTGCTCTACTCGACCAAGAACCTGCAATGTAAAAACCAGATGGCAACTC
ATACCCCAACACCCAACATACCCACATATGAGTATTTCCTGTGAGACTTG
CTGGTGAGGGAGGCCACGCCTTACCTGATATGGCTTCATAGCCCGTTTGA
AACAGTGTCTGGAACACAAGGTGTGATAGGATCTGCGCAGTGAGAACCAT
ACGTTTTCATCGATTAGCCTTGTGGGAACCGGAGGGTTTTTATAGACTTT
GTAGAGAGACAGAGCAGAGCCATGCTTCAAGCTACCAGGGTTTGGGTGCT
AAGGGTGGTGATGTAAACCTGTTGTGTTAAGTGAGAGAACACACCACCTG
CTTCTGCCAATAGTGACACGAACACGGTTGTCATTTGTGACTGGTGGGCT
CATCACAGGGCAACCCAGTAGTGCCTTTCTAAGTTAGAACCGGCTGGCTG
AGGAAAACCTGCTGGGGTAGATCACTGATCTACTTGTGGGGCGTCCTTCT
TCTACCACTTTATGGTGCCCCAGGGGCACCCCTCACTTCATGATCCAAGG
CTCTCTCTACTTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_l23.g1 MSMg01no534_l23.g1 CHROMAT_FILE:
MSMg01no534_l23.g1 PHD_FILE: MSMg01no534_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:22 2005
         (491 letters)



>mm_chr3_51990451_51991341
          Length = 891

 Score =  859 bits (444), Expect = 0.0
 Identities = 478/498 (95%), Gaps = 16/498 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgacagagagcagaacacagcacaatgccatcatcatgcagtgagttagctggcctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 tatgacagagagcagaacacagcacaatgccatcatcatgcagtgagttagctggcctca 771

                                                                       
Query: 61  accccccgcacaacctcccccactccgtcccctcccgaaccagactgatgcccagagccc 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 accccccacacaacctcccccactccgtcccctcccgaaccagactgatgcccagagccc 711

                                                                       
Query: 121 cagcatttcaaccctgctctactcgaccaagaacctgcaatgtaaaaaccagatggcaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 cagcatttcaaccctgctctactcgaccaagaacctgcaatgtaaaaaccagatggcaac 651

                                                                       
Query: 181 tcataccccaacacccaacata-------cccacatatgagtatttcctgtgagacttgc 233
           ||||||||||||||||||||||          ||||||||||||||||||||||||||||
Sbjct: 650 tcataccccaacacccaacatatgtgggt---acatatgagtatttcctgtgagacttgc 594

                                                                       
Query: 234 tggtgagggaggccacgccttacctgatatggcttcatagcccgtttgaaacagtgtctg 293
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 593 tggtgagggaggccacgccttacctgatatggcttcacagcccgtttgaaacagtgtctg 534

                                                                       
Query: 294 gaacacaaggtgtgataggatctgcgcagtgagaaccatacgttttcatcgattagcctt 353
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 533 gaacacaaggtgtgataggatctgcgtagtgagaaccatacgttttcatcgattagcctt 474

                                                                       
Query: 354 gtgggaaccggagggtttttatagactttgtagagagacagagcagagccatgcttcaag 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gtgggaaccggagggtttttatagactttgtagagagacagagcagagccatgcttcaag 414

                                                                       
Query: 414 ctaccagggtttgggtgctaagggtggtgatgtaaacctgttgtgttaagtgagagaaca 473
           ||||||      || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ctacca------ggatgctaagggtggtgatgtaaacctgttgtgttaagtgagagaaca 360

                             
Query: 474 caccacctgcttctgcca 491
           ||||||||||||||||||
Sbjct: 359 caccacctgcttctgcca 342


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)