Query= MSMg01no534_m05.b1 MSMg01no534_m05.b1 CHROMAT_FILE:
MSMg01no534_m05.b1 PHD_FILE: MSMg01no534_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:23 2005
(583 letters)
>mm_chr3_39046970_39047949
Length = 980
Score = 1096 bits (567), Expect = 0.0
Identities = 575/579 (99%), Gaps = 3/579 (0%)
Strand = Plus / Plus
Query: 5 gaattcagaatatctgcagaaaactgtctaggaaattaattttctaggggaaagaagtct 64
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaacatctgcagaaaactgtctaggaaattaattttctaggggaaagaagtct 264
Query: 65 tcattcagcaaatggttcagcgattcattaaagaagttcaggccattcacaaggtcactg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcattcagcaaatggttcagcgattcattaaagaagttcaggccattcacaaggtcactg 324
Query: 125 ccacatgagaatctcacctgtagattatacagatgagtgtcttgcttactttggtcatag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccacatgagaatctcacctgtagattatacagatgagtgtcttgcttactttggtcatag 384
Query: 185 aaagcatggtttcattaaaaaaattggagtttcttgaggggagaacaaaagtatttatgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaagcatggtttcattaaaaaaattggagtttcttgaggggagaacaaaagtatttatgt 444
Query: 245 tcacacatatacgaatgtgtgtgttggggggtatgtgtggatgatctgaaagttggattt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcacacatatacgaatgtgtgtgttggggggtatgtgtggatgatctgaaagttggattt 504
Query: 305 ggattcaggcacactgttctggctggtctttcttcaggacgggtgtggtccttctgcacc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggattcaggcacactgttctggctggtctttcttcaggacgggtgtggtccttctgcacc 564
Query: 365 atcactgggatagactttctccatcagcaatggtgtgcttcttctgcaccaaacctcatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atcactgggatagactttctccatcagcaatggtgtgcttcttctgcaccaaacctcatg 624
Query: 425 tggaccatctgcaccatcactgatgtggaccttctccatcatcgctggtgtggacattgt 484
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 625 tggaccatctgcaccatcactgatgtggacct---ccatcatcgctggtgtggacattgt 681
Query: 485 ccatcatcaatggtgtggaacttctacaccaaacctcatatggttcttgtgcaccattgt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ccatcatcaatggtgtggaacttctacaccaaacctcatatggttcttgtgcaccattgt 741
Query: 545 tagaaaccataccatgagaaagcgagctcttcacaatct 583
|||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tagaaaccataccatgagaaagcgagctcttcacaatct 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 980
Length adjustment: 10
Effective length of query: 573
Effective length of database: 970
Effective search space: 555810
Effective search space used: 555810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_m05.g1 MSMg01no534_m05.g1 CHROMAT_FILE:
MSMg01no534_m05.g1 PHD_FILE: MSMg01no534_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:23 2005
(652 letters)
>mm_chr3_39193754_39194803
Length = 1050
Score = 1151 bits (595), Expect = 0.0
Identities = 641/663 (96%), Gaps = 13/663 (1%)
Strand = Plus / Minus
Query: 1 tttattcttatttatataaagtgggtaaactcagaaaaagactgaagagaaatcaccttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 tttattcttatttatataaagtgggtaaactcagaaaaagactgaagagaaatcaccttg 837
Query: 61 aatgattcactcgtaacgtagaacaaacatttattaggacacctggaaaataggaaatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 aatgattcactcgtaacgtagaacaaacatttattaggacacctggaaaataggaaatca 777
Query: 121 caaagagaagagatttagaaaccacgtcag---------gctctgtgctctggtggggtt 171
||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 776 caaagagaagaaatttagaaaccacgtcaggctctgtgtgctctgtgctctggtggggtt 717
Query: 172 cataggtggaataaaagggatgggttttgtcagcaatgtgcagctatttacttggaagtc 231
|||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 716 cataggtggaatgaaagggatgggttttgtcatcaatgtgcagctgtttacttggaagtc 657
Query: 232 agtgctggtgttacaaagataaggcaggaaggaaatgaaatggatagcagaagacaggag 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 agtgctggtgttacaaagataaggcaggaaggaaatgaaatggatagcagaagacaggag 597
Query: 292 gtcacaggctatctcttctgacttccggaaaactccagagttctttgtgcaaagccagca 351
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 596 gtcacaggctatctcttctgacttccggaaaagtccagacttctttgtgcaaagccagca 537
Query: 352 ggactttgtagtggtgaaatacagtgatctcaaggtattttttgggagcagggctgttct 411
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 536 ggactttgtagtggtgaaatacagtgatctcaaggta--ttttgggagcagggctgttct 479
Query: 412 ttaaggagaagaaagacaccaaaagcctgtgagcacacagagccctgttcacatgctgcc 471
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 478 ttaaggagaagaaagacaccaaaagcctgtgagcacacacagccctgttcacatgctgcc 419
Query: 472 tatgttctctcacatataactggggattcctgagacacctcagcctggtttgcatcactg 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tatgttctctcacatataactggggattcctgagacacctcagcctggtttgcatcactg 359
Query: 532 tgaggaatacacacacatacacgtgcatgcatgtacacacactcaaattcacacatacaa 591
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 358 tgaggaatacacacacatacacgtgcatgcatgcacacacactcaaattcacacatacaa 299
Query: 592 acacact--cacacacacatacacacacactcaaatacacatacatacaggcacacatgt 649
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 actcactcacacacacacatacacacacactcaaatacacatacatacaggcacacatgt 239
Query: 650 aca 652
|||
Sbjct: 238 aca 236
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1050
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1040
Effective search space: 667680
Effective search space used: 667680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
