BAC Information

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BAC

Clone NameMSMg01-535F14
Chromosome15 (Build37)3 (Build37)
Map Location 34,034,578 - 34,035,24499,023,896 - 99,024,450
singlet/doubletsingletsinglet
Overlap geneMtdh
Upstream genePgcp, 1700084J12Rik, Tspyl5, LOC675463
Downstream geneLaptm4b, Matn2, Rpl30, BC030476, Hrsp12, Pop1, Npal2, Kcns2, Stk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535F14.T7 (MSMg01no535_f14.b1)MSMg01-535F14.TJ (MSMg01no535_f14.g1)
ACCAG602819AG602820
length773771
length of high quality
(start - end)		672 (48 - 719)562 (76 - 637)
definitionCHROMAT_FILE: MSMg01no535_f14.b1 PHD_FILE: MSMg01no535_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:08 2005CHROMAT_FILE: MSMg01no535_f14.g1 PHD_FILE: MSMg01no535_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:08 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(34,034,578 - 34,035,244)(99,023,896 - 99,024,450)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTTAGAAATTCTTAGAATCTCCTTAGGAATTACCCAAAATATG
CAAATAAGTTGTTCTAACATTCAATTATGAATCCAGGTAAACTCATTTAA
TACTTAAAGTGTGTATATAGTTGAAAAACAGCCATGGCTTATAAAGCTCT
TACTTAAATTCTGACTCTATTTTCTAACATGCATTACACAAATGTAAGCA
AATAAGCACTCTGTGTATGCAGGAGGCATTCAGTGTTGCTACAGGCTATT
CTAGTTGATCTTTGTTTCAATTCATGCTGCTCTGGATTGTTTTGTTTGGT
CACAATTCTTAAATCTCTTGGTCAGAGAATACTTTTGGATATAAGGACTT
ATTTATTTAGTTATGCTAATTTATTTCAAAATAATCACAATTATCTACCT
AACTATATCTATATAGTGGTATTTTACACATCAAATGACAATGTGAGAAC
ATCATTTCAAACATGTTTAATTTTTTAATAACTAATTTACTATCTACTTC
TGTGTCCAACTTACTGCAATAACTTGTTTTTATTGTGTACCATGAAGAAA
ATGCAGAGATGCTCACAAACATGTGAACAGCTTTAACCCAGGGTACCGTG
CATGGTAGGCAAATGATCTATTACTGAGCTACGATACAGGCTCACACAGA
CATCTATCCAATGGAGAAAGGAGGAGAATTTTTCCCCCTCTTCAGATAAT
TCTGAGCATTCTGCCTTACTATT

TCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAGCCAAGAGACTGGACAGGGACT
CCTGTGCAAGTCCCAGAGTCTGGGAACCATAAACTATGACATTCCAAGAT
GGGTCAGCTCAAGGAAAGAACAAACTGACCTTTCCCACATTTTTGAGGCG
GCCCCTTGATGGATTGGTTAGGACCTGCTAACATTGACAAGGATAAGTCT
TCATTTACTGACTCAGTGTCCAATCTTTTCTAGAAATACCCTCAGACAAC
CCCCCTGAAAAAAAGTAAAATTAAAAAAGAAAAGGTTTCACTAGCTATCT
GTTACACCCTGTCGCCTCAGAAGCTGAGAGCAAAGGCTGCATACAGCCTA
GTGTGCCTCTTCACCCCTTCCCATTGTTGTTTACAGGCCCAGCAGGTTGT
TTTTTTCTTGAGACAGGGGCTCTACATAACCCTGGATGTACTGGTCTACT
GTGTAGACCAGGTTAGCTTTGAACTGATAGAGCTCCTCTGCCTTCTGGAT
GCTGAGATTAATGGAGGGTACCACCATGCTGGCCCAAGAATAAATAAATG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGAGTTANAAATACAAACT
ACTGACAACTATGGTTGACTTCAAAAGGAAAATTTTATTGGTATTTCCTA
TTACCTCTATAGAGAATGGAAATGTAAAAATATTTTACATGGGAATGTTA
TAGCAGCCATGGAACATGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_f14.b1 MSMg01no535_f14.b1 CHROMAT_FILE:
MSMg01no535_f14.b1 PHD_FILE: MSMg01no535_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:08 2005
         (672 letters)



>mm_chr15_34034552_34035623
          Length = 1072

 Score = 1259 bits (651), Expect = 0.0
 Identities = 663/667 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttagaaattcttagaatctccttaggaattacccaaaatatgcaaataagttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gaattccttagaaattcttagaatctccttaggaattacccaaaatatgcaaataagttg 634

                                                                       
Query: 65  ttctaacattcaattatgaatccaggtaaactcatttaatacttaaagtgtgtatatagt 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ttctaacattcaattgtgaatccaggtaaactcatttaatacttaaagtgtgtatatagt 574

                                                                       
Query: 125 tgaaaaacagccatggcttataaagctcttacttaaattctgactctattttctaacatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tgaaaaacagccatggcttataaagctcttacttaaattctgactctattttctaacatg 514

                                                                       
Query: 185 cattacacaaatgtaagcaaataagcactctgtgtatgcaggaggcattcagtgttgcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 cattacacaaatgtaagcaaataagcactctgtgtatgcaggaggcattcagtgttgcta 454

                                                                       
Query: 245 caggctattctagttgatctttgtttcaattcatgctgctctggattgttttgtttggtc 304
           ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 453 caggctattctagttgatccttgcttcaattcatgctgctctggattgttttgtttggtc 394

                                                                       
Query: 305 acaattcttaaatctcttggtcagagaatacttttggatataaggacttatttatttagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 acaattcttaaatctcttggtcagagaatacttttggatataaggacttatttatttagt 334

                                                                       
Query: 365 tatgctaatttatttcaaaataatcacaattatctacctaactatatctatatagtggta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tatgctaatttatttcaaaataatcacaattatctacctaactatatctatatagtggta 274

                                                                       
Query: 425 ttttacacatcaaatgacaatgtgagaacatcatttcaaacatgtttaattttttaataa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttttacacatcaaatgacaatgtgagaacatcatttcaaacatgtttaattttttaataa 214

                                                                       
Query: 485 ctaatttactatctacttctgtgtccaacttactgcaataacttgtttttattgtgtacc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ctaatttactatctacttctgtgtccaacttactgcaataacttgtttttattgtgtacc 154

                                                                       
Query: 545 atgaagaaaatgcagagatgctcacaaacatgtgaacagctttaacccagggtaccgtgc 604
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 153 atgaagaaaatgcagagatgctcacaaacatgtgaacggctttaacccagggtaccgtgc 94

                                                                       
Query: 605 atggtaggcaaatgatctattactgagctacgatacaggctcacacagacatctatccaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  atggtaggcaaatgatctattactgagctacgatacaggctcacacagacatctatccaa 34

                  
Query: 665 tggagaa 671
           |||||||
Sbjct: 33  tggagaa 27


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no535_f14.g1 MSMg01no535_f14.g1 CHROMAT_FILE:
MSMg01no535_f14.g1 PHD_FILE: MSMg01no535_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:08 2005
         (562 letters)



>mm_chr3_99023696_99024657
          Length = 962

 Score = 1035 bits (535), Expect = 0.0
 Identities = 550/555 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagccaagagactggacagggactcctgtgcaagtcccagagtctgggaaccataaact 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 agagccaagagactggacagggactcctgtgcaagtcccggagtctgggaaccataaact 260

                                                                       
Query: 61  atgacattccaagatgggtcagctcaaggaaagaacaaactgacctttcccacatttttg 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 atgacattccaagatgggtcagctcaaggaaagaacaaactggcctttcccacatttttg 320

                                                                       
Query: 121 aggcggccccttgatggattggttaggacctgctaacattgacaaggataagtcttcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggcggccccttgatggattggttaggacctgctaacattgacaaggataagtcttcatt 380

                                                                       
Query: 181 tactgactcagtgtccaatcttttctagaaataccctcagacaacccccctgaaaaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactgactcagtgtccaatcttttctagaaataccctcagacaacccccctgaaaaaaag 440

                                                                       
Query: 241 taaaattaaaaaagaaaaggtttcactagctatctgttacaccctgtcgcctcagaagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaattaaaaaagaaaaggtttcactagctatctgttacaccctgtcgcctcagaagct 500

                                                                       
Query: 301 gagagcaaaggctgcatacagcctagtgtgcctcttcaccccttcccattgttgtttaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagagcaaaggctgcatacagcctagtgtgcctcttcaccccttcccattgttgtttaca 560

                                                                       
Query: 361 ggcccagcaggttgtttttttcttgagacaggggctctacataaccctggatgtactggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 561 ggcccagcaggttgtttttttcttgagacaggggctctacataacccaggctgtactggt 620

                                                                       
Query: 421 ctactgtgtagaccaggttagctttgaactgatagagctcctctgccttctggatgctga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctactgtgtagaccaggttagctttgaactgatagagctcctctgccttctggatgctga 680

                                                                       
Query: 481 gattaatggagggtaccaccatgctggcccaagaataaataaatgtgtgtgtgtgtgtgt 540
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gattaatggagtgtaccaccatgctggcccaagaataaataaatgtgtgtgtgtgtgtgt 740

                          
Query: 541 gtgtgtgtgtgtgtg 555
           |||||||||||||||
Sbjct: 741 gtgtgtgtgtgtgtg 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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