BAC Information

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BAC

Clone NameMSMg01-535L12
Chromosome3 (Build37)
Map Location 117,737,012 - 117,879,207
singlet/doubletdoublet
Overlap genenone
Upstream gene1700061I17Rik, LOC674908, D3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneDpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535L12.T7 (MSMg01no535_l12.b1)MSMg01-535L12.TJ (MSMg01no535_l12.g1)
ACCAG603102AG603103
length780778
length of high quality
(start - end)		639 (50 - 688)585 (83 - 667)
definitionCHROMAT_FILE: MSMg01no535_l12.b1 PHD_FILE: MSMg01no535_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:37 2005CHROMAT_FILE: MSMg01no535_l12.g1 PHD_FILE: MSMg01no535_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,737,012 - 117,737,645)(117,878,623 - 117,879,207)
sequence
NAAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTATAATTAACTGGAGAGTCATTGATTCTTCCTATTTATTT
TTCCACACAAGAAAGCTGGAGCCTATAGAATGATGTGACTTATTCAAAGT
CACACCGTTAATAGTTAATAGGTAGCTGGACTCGCAGAACTCCTTGGCTG
GATTTGTAACAACAACGGTATGTTATTAATCATTATACTCTTGTCATTAC
ATCTCTCAAAGGGCATCTGTTTATTCGGCATTTGTAAGAATACACATATC
CAAAGTGGGCACAACATAACATCTTTGCAGATGGTGACCTAGAATTTGTT
AGTATGTTCATCCATGCTAAGACAATAATGAGTGTATGGAGGGATCCATC
AAGGGTGTGGGAACATTTTTCAGGGCATCTGGGGCCCATCAGCATCAAAT
CATTTAACAGAGTGCAAACAATTTAACACTGAGAGCCTCTCAATTATCTC
CTTGCAAAGAAATAAATGATAAAGGATAAATCTTTACCCTGTGAGCATGT
GAAGCACACTTCCAAACTGCCCTCCCTAATTGGACATTACTAAGCTGTGA
ATGCTCAAAAGATGCATGCAAATTTTAATGTATATCTGTCAAAATGTATA
TAAAGATATTAAAACTATGGGCACCTCCAAAAAAAAACCTAGCAAACATG
TCACTGGGTATATTGTATATTGACCAACAAGTGGGCTTATTAATAATTGT
TCTATTGACACTTACTACNAGTATCTGACT

NCCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTCTTGGGATAACGTTTT
ATGAAGGAAAGAAAAACTCATATGGAAATATGATTTTTATAATGAGCACT
AATCTGAAGAAATTAACAGCAGTCACTGCTATTAAATCCCCAAATCAGAG
ATTTTGGACTGATTAAAAATATACACCATTCAAACAACAGGATTTCATAC
CAGATTCTGCTAGCATAATTATCTTTATATTATTGTAGCACTTTGAGCTA
AGATATGAATTTGTCCTCTAGGATATTTGAAAGGGTTATGAAATATCTCA
GTGTAAAGCACTAGTCGAGGGAAAGGCATTCTTCAAGGTCATTCATGAGT
TTTAAATAGCAAAGCCTGCCCTTTCCGATTACATAAGTAGTATGCAGTAG
AATGGTGATTTAAAACACTTAAGGTTTGAAGACAAATATAATACAATGCA
TATCTGAACATGATCTGTCTGACTTCCAGAATGGAAGGATATTCTAAAGC
TAGAGAACAGTAGTCACTTTCTTTAGGCCATCTAAAATTTCTGTCACCAC
AGATACATTATATAACTTTTTTTTGTGAGAATTTTTCTGTATTGTCTCCA
CTTGTTTTCTGGGTTGTTTTATAACTGCTATCTCTATATCTATCTATCTA
TCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCATCTA
TCTATCTATCTATCTATCTATCTATCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_l12.b1 MSMg01no535_l12.b1 CHROMAT_FILE:
MSMg01no535_l12.b1 PHD_FILE: MSMg01no535_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:37 2005
         (639 letters)



>mm_chr3_117736808_117737846
          Length = 1039

 Score = 1210 bits (626), Expect = 0.0
 Identities = 632/634 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttataattaactggagagtcattgattcttcctatttatttttccacacaagaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttataattaactggagagtcattgattcttcctatttatttttccacacaagaa 264

                                                                       
Query: 65  agctggagcctatagaatgatgtgacttattcaaagtcacaccgttaatagttaataggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agctggagcctatagaatgatgtgacttattcaaagtcacaccgttaatagttaataggt 324

                                                                       
Query: 125 agctggactcgcagaactccttggctggatttgtaacaacaacggtatgttattaatcat 184
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agctggacttgcagaactccttggctggatttgtaacaacaacggtatgttattaatcat 384

                                                                       
Query: 185 tatactcttgtcattacatctctcaaagggcatctgtttattcggcatttgtaagaatac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatactcttgtcattacatctctcaaagggcatctgtttattcggcatttgtaagaatac 444

                                                                       
Query: 245 acatatccaaagtgggcacaacataacatctttgcagatggtgacctagaatttgttagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acatatccaaagtgggcacaacataacatctttgcagatggtgacctagaatttgttagt 504

                                                                       
Query: 305 atgttcatccatgctaagacaataatgagtgtatggagggatccatcaagggtgtgggaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgttcatccatgctaagacaataatgagtgtatggagggatccatcaagggtgtgggaa 564

                                                                       
Query: 365 catttttcagggcatctggggcccatcagcatcaaatcatttaacagagtgcaaacaatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catttttcagggcatctggggcccatcagcatcaaatcatttaacagagtgcaaacaatt 624

                                                                       
Query: 425 taacactgagagcctctcaattatctccttgcaaagaaataaatgataaaggataaatct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taacactgagagcctctcaattatctccttgcaaagaaataaatgataaaggataaatct 684

                                                                       
Query: 485 ttaccctgtgagcatgtgaagcacacttccaaactgccctccctaattggacattactaa 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 685 ttaccctgtgagcatgtgaagcacacttccaaactgccctccctaattggacattattaa 744

                                                                       
Query: 545 gctgtgaatgctcaaaagatgcatgcaaattttaatgtatatctgtcaaaatgtatataa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gctgtgaatgctcaaaagatgcatgcaaattttaatgtatatctgtcaaaatgtatataa 804

                                             
Query: 605 agatattaaaactatgggcacctccaaaaaaaaa 638
           ||||||||||||||||||||||||||||||||||
Sbjct: 805 agatattaaaactatgggcacctccaaaaaaaaa 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no535_l12.g1 MSMg01no535_l12.g1 CHROMAT_FILE:
MSMg01no535_l12.g1 PHD_FILE: MSMg01no535_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:37 2005
         (585 letters)



>mm_chr3_117878423_117879407
          Length = 985

 Score = 1108 bits (573), Expect = 0.0
 Identities = 582/585 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtcttgggataacgttttatgaaggaaagaaaaactcatatggaaatatgatttttataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gtcttgggataacgttttatgaaggaaagaaaaactcatatggaaatatgatttttataa 726

                                                                       
Query: 61  tgagcactaatctgaagaaattaacagcagtcactgctattaaatccccaaatcagagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tgagcactaatctgaagaaattaacagcagtcactgctattaaatccccaaatcagagat 666

                                                                       
Query: 121 tttggactgattaaaaatatacaccattcaaacaacaggatttcataccagattctgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tttggactgattaaaaatatacaccattcaaacaacaggatttcataccagattctgcta 606

                                                                       
Query: 181 gcataattatctttatattattgtagcactttgagctaagatatgaatttgtcctctagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gcataattatctttatattattgtagcactttgagctaagatatgaatttgtcctctagg 546

                                                                       
Query: 241 atatttgaaagggttatgaaatatctcagtgtaaagcactagtcgagggaaaggcattct 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 545 atatttgaaagggttatgaaatatctcagtgtaaagcactagtcaagggaaaggcattct 486

                                                                       
Query: 301 tcaaggtcattcatgagttttaaatagcaaagcctgccctttccgattacataagtagta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tcaaggtcattcatgagttttaaatagcaaagcctgccctttccgattacataagtagta 426

                                                                       
Query: 361 tgcagtagaatggtgatttaaaacacttaaggtttgaagacaaatataatacaatgcata 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 425 tgcagtagaatggtgatttaaaacacttaaggtttgaagacaaatattatacaatgcata 366

                                                                       
Query: 421 tctgaacatgatctgtctgacttccagaatggaaggatattctaaagctagagaacagta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tctgaacatgatctgtctgacttccagaatggaaggatattctaaagctagagaacagta 306

                                                                       
Query: 481 gtcactttctttaggccatctaaaatttctgtcaccacagatacattatataactttttt 540
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 305 gtcactttctttaggccatctaaaattcctgtcaccacagatacattatataactttttt 246

                                                        
Query: 541 ttgtgagaatttttctgtattgtctccacttgttttctgggttgt 585
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttgtgagaatttttctgtattgtctccacttgttttctgggttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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