NNNNNNNNNNNNNNNNAAATGGGGGXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTTTGTTTGGCTCTGAGCCAAATTTTTTAATGGGGT
TATTTGATTTTCTGGAGTCTACTTTCTTGAGTTCTTTATATATATTGGAT
ATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGT
TGGTGTCCTTTTTGTCTTATTGACGGTGTCTTTTACCATACAGAAGCTTT
GCAGTTTCATGAGGTCCCACTTGTCAATTCTCGATCTTACAGCATAAGCC
ATTGCTGTTCTATTCAGGAATTTTTCACCTGTGCCATATCTTCGAGGCTT
TTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAG
CTCCTTGATCCACTTAGTTTTGACCTTAGTACAAGGAGATAGGAATGGAT
CAATTTGATGTACTTCTACATGATAACCACCAGTTGTGCCAGCACCATTT
TTTGAAAATGCTGTCTTTTTTCCACTGGATAGTTTTAGCTCCCTTGTCAA
AGATCAAGTGACCATAGGTGTGTGGGTTAATTTCTGGGTCTTCATTTCTA
TTCCATTGGTCTCCTTGTCTGTCGCTATACCAGTACCACACAGTTTTTAT
CACAATTGCTCTGTAGTAAAGCTTTAGGTCAGACATGGTGATTCCACCAG
AGGATCTTTTATCCTTGAGAAAAGTTTTGCTATCCTAGTTTTTGGTTTTT
CAGATA

NNTTTTCCCGAAGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTCTTCCTTAATTT
TTATTATTTGTAGGTTTGCTCTTTTTATAATGTTCCAGATTTCCTGGATG
TTTTTATCAGGATTTTTTTTTAAGATTTCATATTTTTTGATCAATGTTTC
TCTGTCTTCTTTTGTTTCTTTAAAGCCAGAGATTCTGTTTCATCACTTGT
ATTCTGTTGGTGATCCTTGCTGTTGTGGGGTCTTGAGAACATCTAAAACC
CAGGACAGACCATGTTTTCTTAAACAGAGCAACTTTATAGATTTGAACAT
CAAACTGACCAGCCAGGGACACAGCAAAGACAAGGGAGTGACTTGCTCTC
TTCTGGTTGAATAGACTTTAAAGCCCCAAACCACAAGAAAAATGTATAAG
ATAGGATTCCAAGATTGAAACCCATATGTACTGGCTGGTTTTGTGTGTCA
ACTTTACACAGGCTGGGGTTGTCACAGAGAAAGGAGCTTCACTTGGGGAA
ACGCCTCCACGAGATCCAGCTGTAAGGCATTTTTTCAATTAGTGATTAAG
GGGGGAGGTCCCCTTGTGGGTGCTGCCATCTCTAGGCTGGNTGTCTTTGG
TTCTATAAGAGAGCAGGCTGAAGCAGCCAGGGGAAGCAAGCCAGTAATAC
CCCTCCGTGGCCTCTGCATCAGCTTCTGCTTGATTGAATTCCAGCCCTGA
CTTCCTTTGGAA

Query= MSMg01no535_o23.g1 MSMg01no535_o23.g1 CHROMAT_FILE:
MSMg01no535_o23.g1 PHD_FILE: MSMg01no535_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:54 2005
         (508 letters)



>mm_chr3_16668384_16669291
          Length = 908

 Score =  899 bits (465), Expect = 0.0
 Identities = 498/509 (97%), Gaps = 2/509 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttattcttccttaatttttattatttgtaggtttgctctttttataatgttccagatttc 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattcttcgttaatttttattatttgtaggtttgctctttttataatgttccagatttc 260

                                                                       
Query: 61  ctggatgtttttatcaggatttttttttaagatttcatattttttgatcaatgtttctct 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 ctggatgtttttatcaggatttttttttaagattttatattttttgatcaatgtttctct 320

                                                                       
Query: 121 gtcttcttttgtttctttaaagccagagattctgtttcatcacttgtattctgttggtga 180
           ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcttcttttgtttcttgaaagcctgagattctgtttcatcacttgtattctgttggtga 380

                                                                       
Query: 181 tccttgctgttgtggggtcttgagaacatctaaaacccaggacagaccatgttttcttaa 240
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accttgctgttgttgggtcttgagaacatctaaaacccaggacagaccatgttttcttaa 440

                                                                       
Query: 241 acagagcaactttatagatttgaacatcaaactgaccagccagggacacagcaaagacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagagcaactttatagatttgaacatcaaactgaccagccagggacacagcaaagacaa 500

                                                                       
Query: 301 gggagtgacttgctctcttctggttgaatagactttaaagccccaaaccacaagaaaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggagtgacttgctctcttctggttgaatagactttaaagccccaaaccacaagaaaaat 560

                                                                       
Query: 361 gtataagataggattccaagattgaaacccatatgtactggctggttttgtgtgtcaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 gtataagataggattccaagattgaaacccatatgtactggctggttttgtgtgtcacct 620

                                                                       
Query: 421 ttacacaggctggggttgtcacagagaaaggagcttcacttggggaaacgcctccacgag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttacacaggctggggttgtcacagagaaaggagcttcacttggggaaacgcctccacgag 680

                                        
Query: 481 atccagctgta-aggcattttttcaatta 508
           ||||||||| | ||||||| | |||||||
Sbjct: 681 atccagctg-acaggcattctctcaatta 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)