BAC Information

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BAC

Clone NameMSMg01-536E12
Chromosome3 (Build37)
Map Location 36,977,121 - 37,124,400
singlet/doubletdoublet
Overlap geneTenr, LOC652987, Il2, Il21
Upstream geneAcad9, D3Ertd254e, Gpr103, Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik
Downstream geneCetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536E12.T7 (MSMg01no536_e12.b1)MSMg01-536E12.TJ (MSMg01no536_e12.g1)
ACCAG603532AG603533
length784788
length of high quality
(start - end)		561 (72 - 632)544 (78 - 621)
definitionCHROMAT_FILE: MSMg01no536_e12.b1 PHD_FILE: MSMg01no536_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:20 2005CHROMAT_FILE: MSMg01no536_e12.g1 PHD_FILE: MSMg01no536_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:20 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(36,977,121 - 36,977,681)(37,123,857 - 37,124,400)
sequence
NTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCGTCCAGGTTCCCAAAGAAGGAAAAGAAAAAAAAGAAACATAG
AGACAGGAGGTCATCTGATTGTGAAAGCTCTGACTCTGAGAGTGACACGG
GCAAGAAGATGAGGCATTCATCAAAAGACAGCAAGGCCACCAAGAAGAAA
AAGAAGAAGCAGCAGCACAAGGAATGAGGGTGGAACAAGCCACAGCAGCC
CTTTCTCCTGCAAGGACTCACTAGTGAGAGTGTAGCCTCCTACCCTACTG
ACTTGTCCCGACGGTCTCAGATGGCTTCTCCTCATGCAGCAAGCAGATTG
GGGCCCCGCAGGACACCTACCAACATTGTTTTCCCTTGTTGCTCCTGATC
CTTTGCAAGCGAACCCTGCAGCCATTGCATTCATGCACTCAGTGTCTTCA
TTTCGGCAGAAGGTTCTAGTCCCAACCCGGCTGCCACTGCCCAAGCTGGA
CTCCTCTGCAGGAGTCCATGCTAGAGCCTCAGGTGCTGCTGTGGAGGGAA
GCCTGGCCGTGAGAAAGCGACCCTGACCTGCCAGCTGTTTGGGGTTGCTG
TGGGTGGACTCTGCGGCCTTCATCCCCTCAGCCAGGGCCTGTATTCCAGT
GACTGCTGAACCAGAGATTTGCAGCCAAGGTCATTGTTCTGCTCCCTGTC
TATCATGGTGTGAGTGACTGGTTCCATTTCAGCCTCTGCTTAAATTCTTG
GCATAAATGAAATATGTTTTGTTTTTAACTCTCA

NCCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGAAAGACTAAAATGGCTCCT
TCAAAAGGTATGCACCTTAAATGCATTTCTTTCACTTCCATGTTGTGTCC
GGGTACCTCCTGTGCCCAGTGACTCATAGGCTCTCGTTCCCACAGATGAT
TCATCAGCATCTCTCCTAGAACACATAGGACCCGAAGATTCCTGAGGATC
CGAGAAGATTCCCGAGGACTGAGGAGACGCCGGACACTATAGACGCTCAC
GAATGCAGGAGTACATCTTGCCTCTTGGGATTGCAAGTGGAGAAGTACGA
TACGTTATGATAAGAACAACTCAGAAAAGCTATAGGTTAAGATCCTTTCG
CCCATTAACTAAGCAGACATTGTGGTTCCCTGCACAGACTCCATGCTGTC
AACATGGAAAATCTCAACTCAACAAGAGCCCAGCTTCCCGTGTCAGGGAT
TTCTGGTGCTTCTCAAGCTGTGGCTTCATCTTATTGCCCAACTGTGACAT
TCTTTGATTGGAAGGGGAAAACTAAAGCTTTTAGCAAAAATACAGCTAGG
GAATTTGTCGATCTGCGAGAGTAAGACCTCTTATGATCCTAACGGAATGA
TGTAAGCTGGAAANTATAAGCATAAGATGAAATTGAAAATTTGAGTCTTT
ATTCTTTTAGAAAACTTTTGTACTTGAAAGCATGTCTGAAGAGTTTACTC
NTTACCCCAACATCTAGCATATTGATAACTAACATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_e12.b1 MSMg01no536_e12.b1 CHROMAT_FILE:
MSMg01no536_e12.b1 PHD_FILE: MSMg01no536_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:20 2005
         (561 letters)



>mm_chr3_36976921_36977881
          Length = 961

 Score = 1077 bits (557), Expect = 0.0
 Identities = 560/561 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaaggaaaagaaaaaaaagaaacatagagacaggaggtcatctgattgtgaaagctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaaggaaaagaaaaaaaagaaacatagagacaggaggtcatctgattgtgaaagctct 260

                                                                       
Query: 61  gactctgagagtgacacgggcaagaagatgaggcattcatcaaaagacagcaaggccacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactctgagagtgacacgggcaagaagatgaggcattcatcaaaagacagcaaggccacc 320

                                                                       
Query: 121 aagaagaaaaagaagaagcagcagcacaaggaatgagggtggaacaagccacagcagccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaagaaaaagaagaagcagcagcacaaggaatgagggtggaacaagccacagcagccc 380

                                                                       
Query: 181 tttctcctgcaaggactcactagtgagagtgtagcctcctaccctactgacttgtcccga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctcctgcaaggactcactagtgagagtgtagcctcctaccctactgacttgtcccga 440

                                                                       
Query: 241 cggtctcagatggcttctcctcatgcagcaagcagattggggccccgcaggacacctacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 cggtctcagatggcttctcctcatgcagcaagcagattggggccccgcagggcacctacc 500

                                                                       
Query: 301 aacattgttttcccttgttgctcctgatcctttgcaagcgaaccctgcagccattgcatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacattgttttcccttgttgctcctgatcctttgcaagcgaaccctgcagccattgcatt 560

                                                                       
Query: 361 catgcactcagtgtcttcatttcggcagaaggttctagtcccaacccggctgccactgcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catgcactcagtgtcttcatttcggcagaaggttctagtcccaacccggctgccactgcc 620

                                                                       
Query: 421 caagctggactcctctgcaggagtccatgctagagcctcaggtgctgctgtggagggaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caagctggactcctctgcaggagtccatgctagagcctcaggtgctgctgtggagggaag 680

                                                                       
Query: 481 cctggccgtgagaaagcgaccctgacctgccagctgtttggggttgctgtgggtggactc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctggccgtgagaaagcgaccctgacctgccagctgtttggggttgctgtgggtggactc 740

                                
Query: 541 tgcggccttcatcccctcagc 561
           |||||||||||||||||||||
Sbjct: 741 tgcggccttcatcccctcagc 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no536_e12.g1 MSMg01no536_e12.g1 CHROMAT_FILE:
MSMg01no536_e12.g1 PHD_FILE: MSMg01no536_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:20 2005
         (544 letters)



>mm_chr3_37123657_37124600
          Length = 944

 Score = 1052 bits (544), Expect = 0.0
 Identities = 544/544 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagaaagactaaaatggctccttcaaaaggtatgcaccttaaatgcatttctttcactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctagaaagactaaaatggctccttcaaaaggtatgcaccttaaatgcatttctttcactt 685

                                                                       
Query: 61  ccatgttgtgtccgggtacctcctgtgcccagtgactcataggctctcgttcccacagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccatgttgtgtccgggtacctcctgtgcccagtgactcataggctctcgttcccacagat 625

                                                                       
Query: 121 gattcatcagcatctctcctagaacacataggacccgaagattcctgaggatccgagaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gattcatcagcatctctcctagaacacataggacccgaagattcctgaggatccgagaag 565

                                                                       
Query: 181 attcccgaggactgaggagacgccggacactatagacgctcacgaatgcaggagtacatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 attcccgaggactgaggagacgccggacactatagacgctcacgaatgcaggagtacatc 505

                                                                       
Query: 241 ttgcctcttgggattgcaagtggagaagtacgatacgttatgataagaacaactcagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttgcctcttgggattgcaagtggagaagtacgatacgttatgataagaacaactcagaaa 445

                                                                       
Query: 301 agctataggttaagatcctttcgcccattaactaagcagacattgtggttccctgcacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agctataggttaagatcctttcgcccattaactaagcagacattgtggttccctgcacag 385

                                                                       
Query: 361 actccatgctgtcaacatggaaaatctcaactcaacaagagcccagcttcccgtgtcagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actccatgctgtcaacatggaaaatctcaactcaacaagagcccagcttcccgtgtcagg 325

                                                                       
Query: 421 gatttctggtgcttctcaagctgtggcttcatcttattgcccaactgtgacattctttga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gatttctggtgcttctcaagctgtggcttcatcttattgcccaactgtgacattctttga 265

                                                                       
Query: 481 ttggaaggggaaaactaaagcttttagcaaaaatacagctagggaatttgtcgatctgcg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttggaaggggaaaactaaagcttttagcaaaaatacagctagggaatttgtcgatctgcg 205

               
Query: 541 agag 544
           ||||
Sbjct: 204 agag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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