Query= MSMg01no536_k17.b1 MSMg01no536_k17.b1 CHROMAT_FILE:
MSMg01no536_k17.b1 PHD_FILE: MSMg01no536_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:50 2005
(600 letters)
>mm_chr3_40974619_40975620
Length = 1002
Score = 1114 bits (576), Expect = 0.0
Identities = 593/600 (98%), Gaps = 4/600 (0%)
Strand = Plus / Plus
Query: 5 gaattctcagcaaggtccccgtttttctggcagtgtgaccacagataatgtacttaccct 64
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagcaaggcccccgtttttctggctgtgtgaccacagataatgtacttaccct 264
Query: 65 ctctgaatgtccatctcat--tttcaaacctggggcattactattggatggctgagttac 122
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctctgaatgtccatctcatattttcaaacctggggcattactattggatggctgagttac 324
Query: 123 tcactattcagtatgagtacatattgttacagtttagatgagcagggtgcttaaaataga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcactattcagtatgagtacatattgttacagtttagatgagcagggtgcttaaaataga 384
Query: 183 ctgtgctatgtagtgagagctcaggaagtattagcctgagttatttcataggaggtctgt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgtgctatgtagtgagagctcaggaagtattagcctgagttatttcataggaggtctgt 444
Query: 243 gtaaattaaatccaagccctaggcgtagtgcctggcctggaacaagcattcagtaatatt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtaaattaaatccaagccctaggcgtagtgcctggcctggaacaagcattcagtaatatt 504
Query: 303 agctagtgctgttatcttatttaacatatgagaggcctgttagaaaagaaaatagttatg 362
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agccagtgctgttatcttatttaacatatgagaggcctgttagaaaagaaaatagttatg 564
Query: 363 gttattttactgccaaaaatatttaaaatgtcctggctagaattataattatatttactt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gttattttactgccaaaaatatttaaaatgtcctggctagaattataattatatttactt 624
Query: 423 tgtgtttatatatgttcacgtgtgtttacttacatgtgtgtgatatgtatgtgcacatgt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtgtttatatatgttcacgtgtgtttacttacatgtgtgtgatatgtatgtgcacatgt 684
Query: 483 gtgtggagaccagaggacaaccagtctcaggtattgttccttgggcacaatttcatccac 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtgtggagaccagaggacaaccagtctcaggtattgttccttgggcacaatttcatccac 744
Query: 543 cttcagcttgtgtgtgtgtgtgt--acacatgattgtatatgtgcagtcatgtggaagtc 600
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 745 cttcagcttgtgtgtgtgtgtgtgtacacatgattgtatatgtgcagtcatgtggaagtc 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1002
Length adjustment: 10
Effective length of query: 590
Effective length of database: 992
Effective search space: 585280
Effective search space used: 585280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_k17.g1 MSMg01no536_k17.g1 CHROMAT_FILE:
MSMg01no536_k17.g1 PHD_FILE: MSMg01no536_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:51 2005
(473 letters)
>mm_chr3_41002201_41003073
Length = 873
Score = 876 bits (453), Expect = 0.0
Identities = 468/473 (98%)
Strand = Plus / Minus
Query: 1 tgcattaaagcagcctgattgtttcccatcaccttcccacacaggtctgtcgtcccccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 673 tgcattaaagcagcctgattgtttcccatcaccttcccacacaggtctgtcctcccccct 614
Query: 61 tccccccaccaagcttccagtggcctccaaaaattgagttcaacaggacgccctggtggc 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 613 tccccccaccaagcttccagtggcctccaaaaattgagttcaactggacgccctggtggc 554
Query: 121 atggatattagccatggaaaggaaatgataagctattcttggagcttgcaaacaaagcca 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 atggatattggccatggaaaggaaatgataagctattcttggagcttgcaaacaaagcca 494
Query: 181 ggcgtgtggtaccatcagagcctgagcagacacacacatactcagacaagctctcagaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ggcgtgtggtaccatcagagcctgagcagacacacacatactcagacaagctctcagaag 434
Query: 241 gagacacaacgccccttcccacagtggcctgaagaaggaggcttctgtatgtctgacttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gagacacaacgccccttcccacagtggcctgaagaaggaggcttctgtatgtctgacttt 374
Query: 301 gtaacggggagtgtggggtggagcagatataaatttgagagacgttaaaggataattgaa 360
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 373 gtaatggggagtgtggggtggagcagatataaatttgagagacattaaaggataattgaa 314
Query: 361 aaaaagaaaaaaaaacgagaggagattaggaggtgaaatgaacaaaacgcttcatatgtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aaaaagaaaaaaaaacgagaggagattaggaggtgaaatgaacaaaacgcttcatatgtc 254
Query: 421 catgtgccaaggaggtggtgaggtgtgagagaagtctgtcacggtagccaata 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 catgtgccaaggaggtggtgaggtgtgagagaagtctgtcacggtagccaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
