BAC Information

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BAC

Clone NameMSMg01-536P06
Chromosome3 (Build37)
Map Location 40,089,226 - 40,089,830
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536P06.T7 (MSMg01no536_p06.b1)MSMg01-536P06.TJ (MSMg01no536_p06.g1)
ACCAG604040AG604041
length757780
length of high quality
(start - end)
614 (46 - 659)171 (55 - 225)
definitionCHROMAT_FILE: MSMg01no536_p06.b1 PHD_FILE: MSMg01no536_p06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:12 2005CHROMAT_FILE: MSMg01no536_p06.g1 PHD_FILE: MSMg01no536_p06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAT
CCGCGGAATTCTACACATTGCGCCTTTTGAGCTCCGTGGGCCCATTTCTT
GGTGAGAAAATTAGAGAATTTGAGATTGTGTTGTTACTGTGCTATGCTTA
AATAACAAGAGAGGATGGGGCACACACACTTGGATCCTGCGTTCTACCAG
AATAGAAGCATAAGACTTCCTGGCTCTACCATTCGGAACCAGGTAGGCCA
AGTTGGAGAAACACTCAGGTTGTCTCCTCAGAGTTCCTGAGGACTCTTTC
ATGCCTGGCTTTGCAATGGTTTGCCTTGTTAGCTATCCTGGATTTGTCTT
ACACATGTGCTCATTCTGACCATATCTGACACAAACCCCAAATGATCGCA
GTGGCCGTATGCTCTACTCTAGAACACGAAACTTTGCAAACACGTTTAAC
CTTACAATGACAGCAACAACTTACCTAAGGATAAAGCATCACTCCAGCAG
ATGCCAAAATAAATGACGGAGATTAAATGGTGCTACTGGTGGTCCTACCC
TTCTTCCCCAACTATCTCACCTCAGTCAAGTCCTGTGCTCACATTTCCAA
ATGTGAGCTCCGAAGTGTTTCAACTCCCTGATCTCCTCATGCGCCTGCCA
ATGTGAGGTCGACACACGCTGTGATTCTGGATTTCAGAACACAAGGACAT
CTAGGACATTTCAGAGACCACAGGAGTTTGACCTGTTACACCTGTATGTG
TGGGTGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXATGACTCCTGCTGCATATGTAGCAGAGGATGGTCTAGTTGGTCATC
AATGGGAGGAGAGGCCCTTGGTTCTGTGAAGGCTCTATGCCCCAGTGTAG
GGGAATACCAGGGCCAGGAAGCAGGAGTGGGTGGATTGGTTAGCAAGGGG
AGGGGGAGGGGATAGGGAGGGANANGGNNTTTTTTTTTNTGNTCCCCGCC
CCGGTGCCCCTTTTTCGGTTTTTTCCCCCTTTTCTTCTCGTTGGCCTGTT
TCCTTGCTCCGTTTTTGTCTTCCGCCCTGTTCTATTTTCCTCTCTTTCTG
TTGTCCCTCTTTTCCTCCCCACTTATCCTTCTTCTTTTTTTTTTTTGTCC
CTTTTCCTCCCTTCTCTTTTCTCCTCCTTTTTTTCTCCGCCTTCTCTTTA
TCTTTTATTTTTGTATTTTTTCTCCCCAATTATTTCTTCCTCCTTCTTCA
TCACTTTTTTTTTTTTTTACGCTTTCCCTTTTTTTTTACTTTTTTTTTTC
CTCTCTCTCTTTTAATCACTCTCTCTCCTTTTTTTCTCTACACTCTTTCT
CTCTCTTTTCTCTCACTCTTCTTCTTTTTCTCTCCCCACCTCCCTCAATT
TCTCGTTTAATCACCACCCCCCTGTTTACTTACTTCTTTTATCCCTTTAC
CCCTTTTTTTCCTGTATTTATTTCTCCTCCCTTATTCTCCCCCGCTTTCC
TCTCTCCCCCTCTTCTTCTTATTTTTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_p06.b1 MSMg01no536_p06.b1 CHROMAT_FILE:
MSMg01no536_p06.b1 PHD_FILE: MSMg01no536_p06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:12 2005
         (614 letters)



>mm_chr3_40089016_40090030
          Length = 1015

 Score = 1019 bits (527), Expect = 0.0
 Identities = 587/609 (96%), Gaps = 9/609 (1%)
 Strand = Plus / Minus

                                                                       
Query: 11  gaattctacacattgcgccttttgagctccgtgggcccatttcttggtgagaaaattaga 70
           ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 gaattctacaca-ggggccttttgagctccgtgggcccatttcttggtgagaaaattaga 757

                                                                       
Query: 71  gaatttgagattgtgttgttactgtgctatgcttaaataacaagagaggatgggg--cac 128
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 756 gaatttgagattgtgttgttactgtgctatgcttaaataacaagagaggatggggcacac 697

                                                                       
Query: 129 acacacttggatcctgcgttctaccagaatagaagcataagacttcctggctctaccatt 188
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 696 acacacttggatcctgcgttctaccagaacagaagcataagacttcctggctctaccatt 637

                                                                       
Query: 189 cggaaccaggtaggccaagttggagaaacactcaggttgtctcctcagagttcctgagga 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 cggaaccaggtaggccaagttggagaaacactcaggttgtctcctcagagttcctgagga 577

                                                                       
Query: 249 ctctttcatgcctggctttgcaatggtttgccttgttagctatcctggatttgtcttaca 308
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 576 ctctttcatgcctggctttgcaatggtttgccttgttagctatcctgtatttgtcttaca 517

                                                                       
Query: 309 catgtgctcattctgaccatatctgacacaaaccccaaatgatcgcagtggccgtatgct 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 516 catgtgctcattctgaccatatctgacacaaaccccaaatgatcgcagtgg-cgtatgct 458

                                                                       
Query: 369 ctactctagaa--cacgaaactttgcaaacacgtttaaccttacaatgacagcaacaact 426
           |||||||||||  ||  |||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 457 ctactctagaatgca--aaactttgcaaacacgcttaaccttataatgacagcaacaact 400

                                                                       
Query: 427 tacctaaggataaagcatcactccagcagatgccaaaataaatgacggagattaaatggt 486
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| 
Sbjct: 399 tacctaaggataaagcatcactccagcagatgcaaaaataaatgatggagattaaatggg 340

                                                                       
Query: 487 gctactggtggtcctacccttct-tccccaactatctcacctcagtcaagtcctgtgctc 545
           |||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||
Sbjct: 339 gctactggtggtcctaccctcctatccccaactatctcacctcaggcaagtcctgtgctc 280

                                                                       
Query: 546 acatttccaaatgtgagctccgaagtgtttcaactccctgatctcctcatgcgcctgcca 605
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 279 acatttccaaatgtgagctccgaagtgtttcaactccctgatctcctcaggggcctgcca 220

                    
Query: 606 atgtgaggt 614
           |||||||||
Sbjct: 219 atgtgaggt 211


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1015
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1005
Effective search space:   607020
Effective search space used:   607020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)