BAC Information

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BAC

Clone NameMSMg01-537B22
Chromosome3 (Build37)
Map Location 110,713,235 - 110,896,614
singlet/doubletdoublet
Overlap genenone
Upstream geneNtng1, LOC100043181, LOC100043183, Prmt6
Downstream geneLOC100043190, LOC668712, LOC625585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537B22.T7 (MSMg01no537_b22.b1)MSMg01-537B22.TJ (MSMg01no537_b22.g1)
ACCAG604166AG604167
length750754
length of high quality
(start - end)		666 (52 - 717)598 (81 - 678)
definitionCHROMAT_FILE: MSMg01no537_b22.b1 PHD_FILE: MSMg01no537_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:24 2005CHROMAT_FILE: MSMg01no537_b22.g1 PHD_FILE: MSMg01no537_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:25 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(110,713,235 - 110,713,896)(110,896,174 - 110,896,614)
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTCTAGTGGTATTTACCAGGGACTATTAACATGCAGAA
ATAAATGAAGTTGTTAATCACTTGTATTTTTCTGTTTCATTTCATAAACT
ATATGAGAACATCCACTTTTTCACTTAGAGTAGTCAATTTCAGAAATGAA
ATACATTTATATTCTTGAAGAGTGTGAGTCTCCTCATTTAATCAAAGTAA
GCATGTTTGTAAGCTATTCTAGTAATTGCTCCTTTATTCTAATTTTGTAA
ATTACTACACTTCTTATATTGACAAATTTAGTATGTGTAGTGTTATGATC
CATAACATGTGTTGATCTCCCCATACATTTTACAATACTAGAATAAGACA
ACTATCATACCCATTATCGCACATTCTTGTATTTTGTAATGAAAACACAT
ACATAATATCACAACTAGAGGCAATAGAATGAGACCTCAGTTTGATGTCT
CAGCAGAAGAGCAGACAGGCAGAGATACTATAAATACCTGGCAAGTCAAG
AACTCTAGCTCACTCCAGTACACTCCTCAGTAAGGGAGAGTGGACAATTA
TAATAAAAGTCTTTTAGTAAATATTTTCAAGAATATATCTTATATCTCAG
GTATACTAAGTTTCTGGGCTAATATCCACTTATCAGTGAGCACATATCAT
TTGAGTTCTTTTGTGATTGCGTTACCTCACTCAGGATGATGCCCTCCAGG


NNNCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGAGTTATTAAGTTTCTC
CTAAGAGTGTTAAAGCAGAGTAATTAGAGCATGCATAGAGAAATGTTTTG
GGATTTAGAGAGAATCAAAGTATCAAATATAACCATTGTTATTCAAGGCA
GAATGGTCTACATAATTGTCAGGGTCCAGTGCATAATAAAAAAGCAAAAT
GCTTCCTGATAGCTGTGGTCACAAGGGGTGGGCCTTTGGTTGAAAAGAAG
CTGGAGAATAATGCAGATGGAAACATCCATCCAGACCCTTCTGGCTTTCA
TAGTCTCAATTGAAAAGCCAGGTGTTATTCCAAAGAGTCACTCTTTATAT
GTGAATTCATCTTTTTCCTTTATACCTTTTAATATTCAGTCTCTATTCTT
TTTGTAAGCTGGCCCATGGTTTACATGAACCGGGTACACCTGGGGCTGGA
AGAGACTTAGACTGCAAGAAAAGATAATGAAGCCAAGACAAACGTTCTGA
TCAAGGCTGGTAAGTTTACTAAGAGAGTGTGCTTATAAGGGAGAAGGCCC
ATCCCTCTTGCCCCACCCCACACACCCCCCTCGCCAGTCCATTCTTTGTG
TCTGGAGCCAGCATGTAGATGTAGAAGACCTGCAGGATAGGATGTGTCTC
CAGAAAGTCTCAAGGGTCTCTCAGCAGGTAGCAGTGTCTTGGAGGAGAGC
AGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_b22.b1 MSMg01no537_b22.b1 CHROMAT_FILE:
MSMg01no537_b22.b1 PHD_FILE: MSMg01no537_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:24 2005
         (666 letters)



>mm_chr3_110713031_110714096
          Length = 1066

 Score = 1234 bits (638), Expect = 0.0
 Identities = 656/662 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactctagtggtatttaccagggactattaacatgcagaaataaatgaagttgtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 205 gaattcactctagtggtatttaccagggactattaacatgcagaaataaatgaagttctt 264

                                                                       
Query: 65  aatcacttgtatttttctgtttcatttcataaactatatgagaacatccactttttcact 124
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 aatcacttgtatttttctgtttcatttcataaactataagagaacatccactttttcact 324

                                                                       
Query: 125 tagagtagtcaatttcagaaatgaaatacatttatattcttgaagagtgtgagtctcctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagagtagtcaatttcagaaatgaaatacatttatattcttgaagagtgtgagtctcctc 384

                                                                       
Query: 185 atttaatcaaagtaagcatgtttgtaagctattctagtaattgctcctttattctaattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttaatcaaagtaagcatgtttgtaagctattctagtaattgctcctttattctaattt 444

                                                                       
Query: 245 tgtaaattactacacttcttatattgacaaatttagtatgtgtagtgttatgatccataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtaaattactacacttcttatattgacaaatttagtatgtgtagtgttatgatccataa 504

                                                                       
Query: 305 catgtgttgatctccccatacattttacaatactagaataagacaactatcatacccatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catgtgttgatctccccatacattttacaatactagaataagacaactatcatacccatt 564

                                                                       
Query: 365 atcgcacattcttgtattttgtaatgaaaacacatacataatatcacaactagaggcaat 424
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atcgcacattcttatattttgtaatgaaaacacatacataatatcacaactagaggcaat 624

                                                                       
Query: 425 agaatgagacctcagtttgatgtctcagcagaagagcagacaggcagagatactataaat 484
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 625 agaatgagacctcagtttgatgtctcagcagaagagcagagaggcagagatactataaat 684

                                                                       
Query: 485 acctggcaagtcaagaactctagctcactccagtacactcctcagtaagggagagtggac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acctggcaagtcaagaactctagctcactccagtacactcctcagtaagggagagtggac 744

                                                                       
Query: 545 aattataataaaagtcttttagtaaatattttcaagaatatatcttatatctcaggtata 604
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aattatagtaaaagtcttttagtaaatattttcaagaatatatcttatatctcaggtata 804

                                                                       
Query: 605 ctaagtttctgggctaatatccacttatcagtgagcacatatcatttgagttcttttgtg 664
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 805 ctaagtttctgggctaatatccacttatcggtgagcacatatcatttgagttcttttgtg 864

             
Query: 665 at 666
           ||
Sbjct: 865 at 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no537_b22.g1 MSMg01no537_b22.g1 CHROMAT_FILE:
MSMg01no537_b22.g1 PHD_FILE: MSMg01no537_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:25 2005
         (598 letters)



>mm_chr3_110896174_110897171
          Length = 998

 Score =  830 bits (429), Expect = 0.0
 Identities = 438/441 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   gggagttattaagtttctcctaagagtgttaaagcagagtaattagagcatgcatagaga 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggagttattaagtttctcctaagagtgttaaagcagagtaattagagcatgcatagaga 382

                                                                       
Query: 62  aatgttttgggatttagagagaatcaaagtatcaaatataaccattgttattcaaggcag 121
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtcttgggatttagagagaatcaaagtatcaaatataaccattgttattcaaggcag 322

                                                                       
Query: 122 aatggtctacataattgtcagggtccagtgcataataaaaaagcaaaatgcttcctgata 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatggtctacataattgtcagggtccagtgcataataaaaaagcaaaatgcttcctgata 262

                                                                       
Query: 182 gctgtggtcacaaggggtgggcctttggttgaaaagaagctggagaataatgcagatgga 241
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgtggtcacaagggatgggcctttggttgaaaagaagctggagaataatgcagatgga 202

                                                                       
Query: 242 aacatccatccagacccttctggctttcatagtctcaattgaaaagccaggtgttattcc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacatccatccagacccttctggctttcatagtctcaattgaaaagccaggtgttattcc 142

                                                                       
Query: 302 aaagagtcactctttatatgtgaattcatctttttcctttataccttttaatattcagtc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 aaagagtcactctttatatgtgaattcatctttttcctttataccttttaatattcagtc 82

                                                                       
Query: 362 tctattctttttgtaagctggcccatggtttacatgaaccgggtacacctggggctggaa 421
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 81  tctattctttttgtaagctggcccatggtttacatgaaccgggtacacctggagctggaa 22

                                
Query: 422 gagacttagactgcaagaaaa 442
           |||||||||||||||||||||
Sbjct: 21  gagacttagactgcaagaaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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