NNNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATCGTGTATCACAAAACTTGTTCAAGTTTGTTTAGCCT
TTTGGTAAGAATATTGTTAGAAATGTTGACATTTTGATAGAATCAACAGT
TCGAGGCTATAGAAAATGGTTTTAAAGTGGTTTTCTTGCTCTTGGTAAGC
CAACCGAAGTTTGTAGTATTGATAAGTTGCTCATTCTAGGAGTCAATGCT
GAGTTTGAGATGATGGAGTAGTTAACCATAGGCTGTGGGTGGCTGCAAGG
AAGACTACTGTCAGGGAAGTTAGCAAGAACCAGATTAGCACAACCTGAAG
AGGAACCTTCTGAGAGCTGACAGAGCTGACAGCTGTGACAGACAAACAGA
CAAAGAGCTGCTGGACAAACGTCAAAGCTTGGGAAAATTCTGATGTTTAA
AGCTATAAATATTCATTGCATTATTTGTTGTCAGGGAACCTGAGGTAACT
ATTTGAATATAACATATAGGTTATCCAACTTGTGTGTCAACAGTGAATTC
CATTGGCTTTTGTGGAGTTAATCTCCTTTGGTTCTATAATGTTTTTAATC
AAAAAATGAGGGATGGGATATCTTGCCTTGTCCAGTTATGCAATATTCAG
TGGCTTGGGACTAAGTACAGCAGAGCTGAAGGATTTTGAGACAAGACAAA
AACTCTCCTAAATGAAAGAAACATCCCTCAATACAAAAGGACAGTA

NNNCCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTACTGAATTAGCAATTAACCCT
AGGCTAAGAGAAATTACCTGTAGAAATAGTATTTGGCTTCTACTAAGAGA
AATCACCTGTAGAAATAATATTTGGCTTCTATAAATTCTAATGAAGTTTT
TGTAGGAAATATCATATGACCATATCCAGTTAGAGTTTTTAAATTTAATC
TTTTAAAGTACATGTTAAAATATGAAGATAAGGCTGTGTGTAACTATGCC
TAGTCCTGATGAATTTCTTCCTCTCTGGGGATCATAAATGACTGTAAGTC
AAGGTGATCATATTAAGAAGGGTGCTTTAGATATCAATTAATAGATACTC
AAACTCAAAGTGGATTGAAATGGGAAAAGTTAAGAATAATGATGGGAATA
GTACATGATTTACCAAATTGTCACACACACACACACACACACACACACAC
ACACACATACCCCCCCACACACACCACATTACTTCATATAGATTAATTCC
TATAATGCTCACCAAGTGCTGCTGTTATTCTCATTATTGAAGAGAGAGTG
AGACATATACAGAGAGAACAACTGATCCTCGACCATGTGCAAGAAGTGCA
AGTGCTTAGAACACAGCCACCATGTTCTGGGTACCCAGCCCGGCGGATGA
CTGTTACAGTCTACTGCTTCTTACATGACCAGAAACCTAAAGAAAA

Query= MSMg01no537_e21.g1 MSMg01no537_e21.g1 CHROMAT_FILE:
MSMg01no537_e21.g1 PHD_FILE: MSMg01no537_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:38 2005
         (583 letters)



>mm_chr3_145007551_145008534
          Length = 984

 Score =  926 bits (479), Expect = 0.0
 Identities = 550/587 (93%), Gaps = 28/587 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttactgaattagcaattaaccctaggctaagagaaattacctgtagaaatagtatttggc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 ttactgaattagcaattaaccctaggctaagagaaatcacctgtagaaatagtatttggc 260

                                                                       
Query: 61  ttctactaagagaaatcacctgtagaaataatatttggcttctataaattctaatgaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctactaagagaaatcacctgtagaaataatatttggcttctataaattctaatgaagt 320

                                                                       
Query: 121 ttttgtaggaaatatcatatgaccatatccagttagagtttttaaatttaatcttttaaa 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgtaggaaatatcacatgaccatatccagttagagtttttaaatttaatcttttaaa 380

                                                                       
Query: 181 gtacatgttaaaatatgaagataaggctgtgtgtaactatgcctagtcctgatgaatttc 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtacacgttaaaatatgaagataaggctgtgtgtaactatgcctagtcctgatgaatttc 440

                                                                       
Query: 241 ttcctctctggggatcataaatgactgtaagtcaaggtgatcatattaagaagggtgctt 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ttcctctctggggatcataaatgactgtaagtcaaggtggtcatattaagaagggtgctt 500

                                                                       
Query: 301 tagatatcaattaatagatactcaaactcaaagtggattgaaatgggaaaag-ttaagaa 359
           ||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 501 tagatatcaattaattgatactcaaactcaaagtggattgaaatgggaaaaaattaagaa 560

                                                                       
Query: 360 taatgatgggaatagtacatgatttaccaaattgtcacacacacacacacacacacacac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatgatgggaatagtacatgatttaccaaattgtcacacacacacacacacacacacac 620

                                                                       
Query: 420 -ac-acacacacatacccccccacacacaccacattacttcatatagattaattcctata 477
            || | ||| | ||||                   |||   |||||||||||||||| ||
Sbjct: 621 tactataca-a-atac-------------------tac---atatagattaattcctgta 656

                                                                       
Query: 478 atgctcaccaagtgctgctgttattctcattattgaa-gagagagtgagacatatacaga 536
           ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 657 atgctcaccaagtgctgttgttattctcattattgaacgagagagtgagacatatacaga 716

                                                          
Query: 537 gagaacaactgatcctcgaccatgtgcaagaagtgcaagtgcttaga 583
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gagaacaactgatcctcgaccatgtgcaagaagtgcaagtgcttaga 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 984
Length adjustment: 10
Effective length of query: 573
Effective length of database: 974
Effective search space:   558102
Effective search space used:   558102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)