Query= MSMg01no537_f21.b1 MSMg01no537_f21.b1 CHROMAT_FILE:
MSMg01no537_f21.b1 PHD_FILE: MSMg01no537_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:43 2005
(613 letters)
>mm_chr3_54956789_54957801
Length = 1013
Score = 373 bits (193), Expect = e-107
Identities = 299/375 (79%), Gaps = 63/375 (16%)
Strand = Plus / Minus
Query: 4 gggtgggtgctagctacaaattaaaacatcctgcttgaggttttaaaagagtgaaaaaac 63
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 371 gggtgggtgctagctacaaattaaaacatcctgcttgaggttttaagagagtgaaacaac 312
Query: 64 aatacaacttagctaactccagacacggccagccctgacaggagattcttcatgctgaca 123
|||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||
Sbjct: 311 aatacaacttagctaactccagacaccgccagccctaataggagattcttcatgctgaca 252
Query: 124 ttacaaatgcccccttgtggacgaacctgattattacaatatatagca------------ 171
|||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 251 ttacaaatgcccccttgtggacaaacctgattattacaatatatagcactgttttatatc 192
Query: 172 -----------------------------------------------tcagtttgtgagt 184
|||||||||||||
Sbjct: 191 tatatctatctatatctatatatctatatatatctatatatctgacatcagtttgtgagt 132
Query: 185 atgtctgtggaagttgcacctaaaaactgatgatttgtaacaaagacaaacaaactggga 244
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 131 atgtctgtggaagttgcacctaaaaactgatgattcgtaacaaagacaaac----tggga 76
Query: 245 ggggggctggagagacgtttggctgtgaaaagtacttcaagctgtgccagaggactcggg 304
||||||||||||||||||| |||||||||||||||||||||||||| ||||| | ||||
Sbjct: 75 agggggctggagagacgtttagctgtgaaaagtacttcaagctgtgctagagggcccggg 16
Query: 305 tctgggtcttagcac 319
||| |||||||||||
Sbjct: 15 tctaggtcttagcac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_f21.g1 MSMg01no537_f21.g1 CHROMAT_FILE:
MSMg01no537_f21.g1 PHD_FILE: MSMg01no537_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:43 2005
(653 letters)
>mm_chr3_54805597_54806649
Length = 1053
Score = 1195 bits (618), Expect = 0.0
Identities = 645/654 (98%), Gaps = 3/654 (0%)
Strand = Plus / Plus
Query: 1 atcgcccccttctggcttccatgggtactacacacatgtggctgcagctatacatgcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 atcgcccccttctggcttccatgggtactacacacatgtggctgcagctatacatgcagg 261
Query: 61 caaacataaatatatgtagaaaataaaaataaacgtttttttaaagggagtataatgttt 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 262 caaacataaatatatgtagaaaataaaaataaacgtttttt-aaagggagtataatgttt 320
Query: 121 aatgcctaagaagtagctgcattaatgtacacgttagacatgctaacaattggacctcac 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 aatgcctaagaagtagctgcattaatgtacacgttagacacgctaacaattggacctcac 380
Query: 181 cccagttgtagggaaccaaaacctagagaagaaaaaaaaatt-atcattttgttccctga 239
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 381 cccagttgtagggaaccaaaacctagagaagaaaaaaaa-ttcatcattttgttccctga 439
Query: 240 gtgtctctgacttactgtgcgtgtgagtggccatgagcagtgctgacagtctacacttct 299
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 440 gtgtctctgacttactgtgtgtgtgagtggccatgagcagtgctgacagtttacacttct 499
Query: 300 gtcatctaattctgtgctgcttgtctggggactgtgtgtggcaacatcttaaatgcagaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtcatctaattctgtgctgcttgtctggggactgtgtgtggcaacatcttaaatgcagaa 559
Query: 360 ggacccaaactcctttgcttggcctggaaagcctcggccagccctcacccctagcttgac 419
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 560 ggacccaaactcctttgcttggcctagaaagcctcggccagccctcacccctagcttgac 619
Query: 420 tcaggaccctcatcaccatcacctacagatactgctgcatctggctcatgcccaaggtca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcaggaccctcatcaccatcacctacagatactgctgcatctggctcatgcccaaggtca 679
Query: 480 caccaataacaagccactggtcacctgcctgtctcttaacggccacagctcacacatcag 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 680 caccaataacaagccactggtcacctgcctgtctcttaagggccacagctcacacatcag 739
Query: 540 tcgagaccctgccatacatactagccctcctgctcttcccagctgcccgtgatcacctca 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 740 tcgagaccctgccatacatactagccctcctgctcttcccagctgcccgtgctcacctca 799
Query: 600 atctctcacgaactctgttttattggaattgattattgatggctctctttcctc 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 atctctcacgaactctgttttattggaattgattattgatggctctctttcctc 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
