Query= MSMg01no537_i22.b1 MSMg01no537_i22.b1 CHROMAT_FILE:
MSMg01no537_i22.b1 PHD_FILE: MSMg01no537_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:57 2005
(700 letters)
>mm_chr3_85810222_85811322
Length = 1101
Score = 1236 bits (639), Expect = 0.0
Identities = 684/707 (96%), Gaps = 15/707 (2%)
Strand = Plus / Minus
Query: 7 gaattcctgatcctgcttccaacttgtaattcctgtttttgcctagcttcaatctagttt 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gaattcctgatcctgcttccaacttgtaattcctgtttttgcctagcttcaatctagttt 665
Query: 67 ttaaatgaacaaaatgagacctatacactatagaaacccagctgttaaaatcatgaagaa 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ttaaatgaacaaaatgagacctatacactatagaaacccagctgttaaaatcatgaagaa 605
Query: 127 ttatttagtatgagtagaaccaaaaattgtcaaggaggagtattttctctttagtaagat 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ttatttagtatgagtagaaccaaaaattgtcaaggaggagtattttctctttagtaagat 545
Query: 187 atagaatatataccttatatatcataggtatacaaatccctacaagaaggtaagcagggc 246
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 544 atagaatatataccttatatatcataggtatacaaatccctacaagaaggcaagcagggc 485
Query: 247 agaactcggacagggtcaatctcagtcaagggatacctacagaccagctaagaaaataaa 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agaactcggacagggtcaatctcagtcaagggatacctacagaccagctaagaaaataaa 425
Query: 307 gagccagggaaaagagagggctgtccagatgtccaggggtccagggtgtgagctcaatat 366
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 424 gagccagggaaaagagagggctgtccagatgtccaggggtccagggtgtgagcttgatat 365
Query: 367 aacagatatatatatatatatattctatgacttagtgtactgaaattaaggcttgactaa 426
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 364 aacagatatatatatatatat--tctatgacttagtgtactgaaattaaggcttgactaa 307
Query: 427 aatgttcttatccaggttcaagaactaagatatgattgggccctttaaatttgtgttttt 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aatgttcttatccaggttcaagaactaagatatgattgggccctttaaatttgtgttttt 247
Query: 487 cattattattattattatt---ggcggtggtggtggtgat----------gagtgtatgc 533
||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct: 246 cattattattattattattattggcggtggtggtggtgatagtgtatactgagtgtacgc 187
Query: 534 ttgtgtgagcatgtaccacagcaactgtgtgaaggccagaggacaacttttgggagtcag 593
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 186 ttgtgtgagcatgtaccacagcaactgcgtgaaggccagaggacaacttttgggagtcag 127
Query: 594 ccctctttaatgtaggttccagggatcgaacttgtgtgacaggattttatggcaagcttt 653
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 126 ccttctttaatgtaggttccagggatcgaacttgtgtgacaggatttcatggcaagcttt 67
Query: 654 tcaccagctaagccatcttgccagcctcagattggatcttccagtag 700
|||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 66 tcaccagctaagccatcttgccagcctcagatcggatcttccagtag 20
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1101
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1091
Effective search space: 752790
Effective search space used: 752790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_i22.g1 MSMg01no537_i22.g1 CHROMAT_FILE:
MSMg01no537_i22.g1 PHD_FILE: MSMg01no537_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:57 2005
(631 letters)
>mm_chr3_85657132_85658162
Length = 1031
Score = 1181 bits (611), Expect = 0.0
Identities = 626/631 (99%)
Strand = Plus / Plus
Query: 1 cataggcttgaaagacaatatgtcaagagaattttaagtttttcagtgcatttgtgtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataggcttgaaagacaatatgtcaagagaattttaagtttttcagtgcatttgtgtttt 260
Query: 61 tgtttgtttgtttgtttttatggggaggcatatgccacagctctatgtgaaggtcagaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtttgtttgtttgtttttatggggaggcatatgccacagctctatgtgaaggtcagaga 320
Query: 121 taatctgaaggagacggtcagtcctggtgaatgaactcaggttgttagacttttcagcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatctgaaggagacggtcagtcctggtgaatgaactcaggttgttagacttttcagcaa 380
Query: 181 aaagcattatccactaaaccctctcactgacccagaggataattttcaacagacaaaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagcattatccactaaaccctctcactgacccagaggataattttcaacagacaaaagt 440
Query: 241 tttcaacaaatttctggaaaacaaaagatagcaaggggatgtgctgataggtgcattgga 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 441 tttcaacaaatttctggaaaacaaaagatagcaaggggatgtgctaataggtgcactgga 500
Query: 301 agagagctactgcccaaggccatggtggccagaaccagggagctctaggctagccaacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagagctactgcccaaggccatggtggccagaaccagggagctctaggctagccaacaa 560
Query: 361 gtatccgtagtaaagaggggagaaccatacaggatgggcaaggttgagtcatgagtgtta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtatccgtagtaaagaggggagaaccatacaggatgggcaaggttgagtcatgagtgtta 620
Query: 421 acattcccaattccctctccctctcccagacaaagcccttgagcaacctgacagaccaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acattcccaattccctctccctctcccagacaaagcccttgagcaacctgacagaccaaa 680
Query: 481 catgtcaacactcatgtctaaagaaactgagccgactgcagcgaggagtgaggtgtgggt 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 catgtcaacactcatgtctaaagaaactgagccgactgcagcgaggagtaaggtgtgggt 740
Query: 541 tctgaagtgaattttgcaattcagaataaattttttatcctggctggctatcacatattc 600
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 741 tctgaagtgaattttgcaattcagaataaattttttatcctgtctggctatcacatattc 800
Query: 601 caatactatgccaaagacactggcagagagg 631
||||||||||||||||| |||||||||||||
Sbjct: 801 caatactatgccaaagatactggcagagagg 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
