MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-537K03
Chromosome	3 (Build37)
Map Location	9,644,906 - 9,645,502
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Hey1, LOC100039504, Mrps28, Tpd52, LOC100041389, LOC667886, Zbtb10, Zfp704
Downstream gene	Pag1, LOC621504, Fabp5, LOC100041480, Pmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16
Link	Open Mouse BAC browser

Click to get alignment info.

name	Hey1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15213 MGI:1341800
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039504 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039504
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Mrps28 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66230 MGI:1913480
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tpd52 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21985 MGI:107749
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 5 mRNAs

name	LOC100041389 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041389
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC667886 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667886
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 112 ESTs, 2 Proteins pseudo : _no_value

name	Zbtb10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229055 MGI:2139883
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 119 ESTs, 1 Protein

name	Zfp704 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170753 MGI:2180715
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pag1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:94212 MGI:2443160
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC621504 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:621504
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins

name	Fabp5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16592 MGI:101790
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041480 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041480
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 26 ESTs, 6 Proteins

name	Pmp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18857 MGI:102667
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fabp9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21884 MGI:1194881
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fabp4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11770 MGI:88038
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700008G05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75497 MGI:1922747
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Impa1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:55980 MGI:1933158
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc10a5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:241877 MGI:2685251
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfand1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66361 MGI:1913611
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Chmp4c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66371 MGI:1913621
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Snx16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74718 MGI:1921968
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hey1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117606331 GeneID:15213 MGI:1341800
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hairy/enhancer-of-split related with YRPW motif 1 transcript_id : NM_010423.2

name	LOC100039504 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250594 GeneID:100039504
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100039504 transcript_id : XM_001473019.1

name	Mrps28 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981287 GeneID:66230 MGI:1913480
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial ribosomal protein S28 transcript_id : NM_025434.2

name	Tpd52 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70608203 GeneID:21985 MGI:107749
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tumor protein D52 transcript_id : NM_009412.2

name	Tpd52 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70608213 GeneID:21985 MGI:107749
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tumor protein D52 transcript_id : NM_001025263.1

name	Tpd52 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70608204 GeneID:21985 MGI:107749
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tumor protein D52 transcript_id : NM_001025264.1

name	Tpd52 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70608197 GeneID:21985 MGI:107749
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tumor protein D52 transcript_id : NM_001025262.1

name	Tpd52 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70608193 GeneID:21985 MGI:107749
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tumor protein D52 transcript_id : NM_001025261.1

name	LOC100041389 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250619 GeneID:100041389
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041389 transcript_id : XM_001476491.1

name	Zbtb10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149250597 GeneID:229055 MGI:2139883
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 119 ESTs, 1 Protein product : zinc finger and BTB domain containing 10, transcript variant 1 transcript_id : XM_485202.5

name	Zfp704 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:18875369 GeneID:170753 MGI:2180715
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 704 transcript_id : NM_133218.1

name	Pag1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802897 GeneID:94212 MGI:2443160
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphoprotein associated with glycosphingolipid microdomains 1 transcript_id : NM_053182.3

name	LOC621504 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250599 GeneID:621504
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins product : similar to peptidylprolyl isomerase D transcript_id : XM_001473248.1

name	Fabp5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130073 GeneID:16592 MGI:101790
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fatty acid binding protein 5, epidermal transcript_id : NM_010634.2

name	LOC100041480 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250621 GeneID:100041480
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 26 ESTs, 6 Proteins product : similar to Myef2 protein transcript_id : XM_001476587.1

name	Pmp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131160 GeneID:18857 MGI:102667
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : peripheral myelin protein 2 transcript_id : NM_001030305.2

name	Fabp9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254573 GeneID:21884 MGI:1194881
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fatty acid binding protein 9, testis transcript_id : NM_011598.2

name	Fabp4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:14149634 GeneID:11770 MGI:88038
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fatty acid binding protein 4, adipocyte transcript_id : NM_024406.1

name	1700008G05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037414 GeneID:75497 MGI:1922747
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700008G05 gene transcript_id : NM_029310.1

name	Impa1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371023 GeneID:55980 MGI:1933158
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : inositol (myo)-1(or 4)-monophosphatase 1 transcript_id : NM_018864.4

name	Slc10a5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84579886 GeneID:241877 MGI:2685251
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 10 (sodium/bile acid cotransporter family), member 5 transcript_id : NM_001010834.2

name	Zfand1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982673 GeneID:66361 MGI:1913611
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, AN1-type domain 1 transcript_id : NM_025512.2

name	Chmp4c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133893355 GeneID:66371 MGI:1913621
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chromatin modifying protein 4C transcript_id : NM_025519.2

name	Snx16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560060 GeneID:74718 MGI:1921968
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sorting nexin 16 transcript_id : NM_029068.2

name	Hey1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117606332 CCDS:CCDS17232.1 GeneID:15213 MGI:1341800
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence ISS]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0001570 - vasculogenesis [Evidence IGI] codon_start : 1 note : Hairy/E(spl)-related with YRPW motif 1 product : hairy/enhancer-of-split related with YRPW motif 1 protein_id : NP_034553.2

name	LOC100039504 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250595 GeneID:100039504
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473069.1

name	Mrps28 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981288 CCDS:CCDS17233.1 GeneID:66230 MGI:1913480
definition	GO_component : GO:0005739 - mitochondrion [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : mitochondrial ribosomal protein S28 protein_id : NP_079710.2

name	Tpd52 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678407 GeneID:21985 MGI:107749
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005783 - endoplasmic reticulum [Evidence ISS]; GO:0048471 - perinuclear region [Evidence ISS] GO_function : GO:0005509 - calcium ion binding [Evidence ISS]; GO:0046982 - protein heterodimerization activity [Evidence IDA]; GO:0042803 - protein homodimerization activity [Evidence IDA] GO_process : GO:0030183 - B cell differentiation [Evidence ISS]; GO:0046903 - secretion [Evidence ISS] codon_start : 1 note : isoform 5 is encoded by transcript variant 5 product : tumor protein D52 isoform 5 protein_id : NP_033438.1

name	Tpd52 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70608214 GeneID:21985 MGI:107749
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005783 - endoplasmic reticulum [Evidence ISS]; GO:0048471 - perinuclear region [Evidence ISS] GO_function : GO:0005509 - calcium ion binding [Evidence ISS]; GO:0046982 - protein heterodimerization activity [Evidence IDA]; GO:0042803 - protein homodimerization activity [Evidence IDA] GO_process : GO:0030183 - B cell differentiation [Evidence ISS]; GO:0046903 - secretion [Evidence ISS] codon_start : 1 note : isoform 3 is encoded by transcript variant 3 product : tumor protein D52 isoform 3 protein_id : NP_001020434.1

name	Tpd52 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70608205 GeneID:21985 MGI:107749
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005783 - endoplasmic reticulum [Evidence ISS]; GO:0048471 - perinuclear region [Evidence ISS] GO_function : GO:0005509 - calcium ion binding [Evidence ISS]; GO:0046982 - protein heterodimerization activity [Evidence IDA]; GO:0042803 - protein homodimerization activity [Evidence IDA] GO_process : GO:0030183 - B cell differentiation [Evidence ISS]; GO:0046903 - secretion [Evidence ISS] codon_start : 1 note : isoform 4 is encoded by transcript variant 4 product : tumor protein D52 isoform 4 protein_id : NP_001020435.1

name	Tpd52 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70608198 GeneID:21985 MGI:107749
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005783 - endoplasmic reticulum [Evidence ISS]; GO:0048471 - perinuclear region [Evidence ISS] GO_function : GO:0005509 - calcium ion binding [Evidence ISS]; GO:0046982 - protein heterodimerization activity [Evidence IDA]; GO:0042803 - protein homodimerization activity [Evidence IDA] GO_process : GO:0030183 - B cell differentiation [Evidence ISS]; GO:0046903 - secretion [Evidence ISS] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : tumor protein D52 isoform 2 protein_id : NP_001020433.1

name	Tpd52 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70608194 GeneID:21985 MGI:107749
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005783 - endoplasmic reticulum [Evidence ISS]; GO:0048471 - perinuclear region [Evidence ISS] GO_function : GO:0005509 - calcium ion binding [Evidence ISS]; GO:0046982 - protein heterodimerization activity [Evidence IDA]; GO:0042803 - protein homodimerization activity [Evidence IDA] GO_process : GO:0030183 - B cell differentiation [Evidence ISS]; GO:0046903 - secretion [Evidence ISS] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : tumor protein D52 isoform 1 protein_id : NP_001020432.1

name	LOC100041389 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250620 GeneID:100041389
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476541.1

name	Zbtb10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149250598 GeneID:229055 MGI:2139883
definition	codon_start : 1 product : zinc finger and BTB domain containing 10 isoform 1 protein_id : XP_485202.5

name	Zfp704 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18875370 CCDS:CCDS17234.1 GeneID:170753 MGI:2180715
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : glucocorticoid induced gene 1 protein_id : NP_573481.1

name	Pag1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543456 CCDS:CCDS17235.1 GeneID:94212 MGI:2443160
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA] codon_start : 1 note : phosphoprotein-associated with GEMs; phosphoprotein associated with glycosphingolipid-enriched microdomains; phosphoprotein transmembrane adaptor 1 product : phosphoprotein associated with glycosphingolipid microdomains 1 protein_id : NP_444412.2

name	LOC621504 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250600 GeneID:621504
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473298.1

name	Fabp5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754450 GeneID:16592 MGI:101790
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008289 - lipid binding [Evidence IEA] GO_process : GO:0006006 - glucose metabolism [Evidence IMP]; GO:0015758 - glucose transport [Evidence IMP]; GO:0006629 - lipid metabolism [Evidence IMP]; GO:0006656 - phosphatidylcholine biosynthesis [Evidence IGI]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : keratinocyte lipid binding protein; Fabpe E-FABP product : fatty acid binding protein 5, epidermal protein_id : NP_034764.1

name	LOC100041480 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250622 GeneID:100041480
definition	codon_start : 1 product : similar to Myef2 protein protein_id : XP_001476637.1

name	Pmp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71892436 CCDS:CCDS17236.1 GeneID:18857 MGI:102667
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008289 - lipid binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 product : peripheral myelin protein 2 protein_id : NP_001025476.1

name	Fabp9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254574 CCDS:CCDS17237.1 GeneID:21884 MGI:1194881
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008289 - lipid binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : testis lipid binding protein product : fatty acid binding protein 9, testis protein_id : NP_035728.2

name	Fabp4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:14149635 CCDS:CCDS17238.1 GeneID:11770 MGI:88038
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008289 - lipid binding [Evidence IEA]; GO:0016564 - transcriptional repressor activity [Evidence IMP] GO_process : GO:0042632 - cholesterol homeostasis [Evidence IMP]; GO:0001816 - cytokine production [Evidence IMP]; GO:0006469 - negative regulation of protein kinase activity [Evidence IMP]; GO:0016481 - negative regulation of transcription [Evidence IMP]; GO:0050729 - positive regulation of inflammatory response [Evidence IMP]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : adipocyte protein aP2; lipid binding protein-like product : fatty acid binding protein 4, adipocyte protein_id : NP_077717.1

name	1700008G05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037415 CCDS:CCDS17239.1 GeneID:75497 MGI:1922747
definition	GO_function : GO:0008289 - lipid binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 product : similar to Myelin P2 protein protein_id : NP_083586.1

name	Impa1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980942 CCDS:CCDS17240.1 GeneID:55980 MGI:1933158
definition	EC_number : 3.1.3.25 GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004437 - inositol or phosphatidylinositol phosphatase activity [Evidence IEA]; GO:0008934 - inositol-1(or 4)-monophosphatase activity [Evidence IEA] [Evidence ISS]; GO:0031403 - lithium ion binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0006020 - myo-inositol metabolism [Evidence TAS] codon_start : 1 note : lithium-sensitive myo-inositol monophosphatase A1 product : inositol (myo)-1(or 4)-monophosphatase 1 protein_id : NP_061352.2

name	Slc10a5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58082065 CCDS:CCDS17241.1 GeneID:241877 MGI:2685251
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008508 - bile acid:sodium symporter activity [Evidence IEA] GO_process : GO:0006814 - sodium ion transport [Evidence IEA] codon_start : 1 product : solute carrier family 10 (sodium/bile acid cotransporter family), member 5 protein_id : NP_001010834.1

name	Zfand1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982674 CCDS:CCDS17242.1 GeneID:66361 MGI:1913611
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : zinc finger, AN1-type domain 1 protein_id : NP_079788.2

name	Chmp4c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384940 CCDS:CCDS17243.1 GeneID:66371 MGI:1913621
definition	GO_process : GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : Snf7 homologue associated with Alix 3 product : chromatin modifying protein 4C protein_id : NP_079795.1

name	Snx16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560061 CCDS:CCDS17244.1 GeneID:74718 MGI:1921968
definition	GO_function : GO:0035091 - phosphoinositide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : sorting nexin 16 protein_id : NP_083344.2

name	LOC667886 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149250596 GeneID:667886
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 112 ESTs, 2 Proteins product : similar to ribosomal protein pseudo : _no_value transcript_id : XR_031014.1

clone name	MSMg01-454H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-273F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118C04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-097O15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-490B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-300C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-088H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-170O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537K03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-065G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-193H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-307J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-208N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493C12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-033E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135D13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257G04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308C17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-070J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320K15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289I20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-028K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177I15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-319J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307I20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-213C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346B05
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-537K03.T7 (MSMg01no537_k03.b1)	MSMg01-537K03.TJ (MSMg01no537_k03.g1)
ACC	AG604557	AG604558
length	766	1,249
length of high quality (start - end)	577 (50 - 626)	---
definition	CHROMAT_FILE: MSMg01no537_k03.b1 PHD_FILE: MSMg01no537_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:02 2005	CHROMAT_FILE: MSMg01no537_k03.g1 PHD_FILE: MSMg01no537_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:03 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	AGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC GCGGAATTCACTCTGTAGATTTCGCTGGCCTCAAAATCAGAGATCTGCCT CCTTCAAGTACCGGGATTAAAGTCATACACCCCCATACAGGCCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTAATGAGACAAGCAATGAAGGGG GATGCGTCTAATTTACAGGATAAGATTACCAGACCGTCTTTGAGGACTGA TTGGACACTTGGAAAAGATCTTAAATAAACAATTGAAATATATATATATA TTTAATTGAAGGAAAACAGACCTAGGAAAATAAATACTGAGCCAGGCATT CTTCCAGGTTCCTGTGCTCATGGCAGAGAGTAGGAGGGGCCAGCAAGCCT TGGAATATAACCCACAGACAAGCTAGATACCCAGCAGTCCACCACAGAGT TGCTGAAGTGGGGTATTTAAGTGGGAATACTGCCGGGACTCATGTTGTGA GGTCAGGAGTATGTGAATTCAGAGAGAAACATGACCGCATTATTTCAGGG GTCTGTGTATTCTTGAAGAAATTATCAATCAAGAGACAGTTTAAGCAGTT TATTTAGCCAAGTAAACAAGCACTTCAGAGATTGGAGTCAGCTGCACCCA AAGAGGGAAACACTACAGCAGGTTCTGGGCTGAAGATTCTAACGCTATTC TCATGACTATGCATGAGCTATATTACATACATATTCTTTGAAGTAAAGGA GTGGTTTTTTTTGTTT	TTCCGTTTCGTCGGTTCAGTGGCGGGCGAGACGCCTGGTGCTTCCCACCT TGACTGCGTCTCTCTCGACTGGAGCCCTCGCGAGCGACCCCGCGGTCTAG AGAGCTGATGTGTTGGTGTGCGTGATTGCTGTGCTGATGGGTTGTGTGTC GTTTGGTATATGAAGTGCGCGACATCACGCAGAGTCTAGTGTGCAGATGA TCCAGAGAGAAGGACAGACAGACCAACACTACCACCGACACGCCTCACCG TCGCTTAATACCTGCTACTATTGCAGCACTCTAACACAACGGATGTTAGC CCTACATGCTCCACTATATGCACACGTGTGTGTCTTGCGTATGCGACGCT ACACTGCGACACGAGACCATTCAATCGACAGAGAGCGTAAACATATGTAG TTGTATAAAACACACAGTCACTCACAACGCACTTATGTGTAGATAAATAC AACGAACAACGCACTCAAGCAGTCGCGATATATCACTCCGACCTCATCAC CACACTTATACACGCAACTGACAGCGCCGCACAGCTCNACGACCTACACG ACCAGTGTCTGCATCGTGTCTTATCTCACGCGCGTGCATCTCAGCTCGTT GTCTCAGCGCGCGACCCCTTGCATGTGTCTGTTCGCGCGCGGTAACGTCG CGCGCTCTCATATTGCGCTTAACGTCCGCTGATGATGAATACGTAGAGGT CCGACTGATATACGCCGCGCGTAGTGGTCGTGTTCCTGGATGCCAGTACT ATGGTGCTACGATGGCGCCACTCTGCCGTGCGTCCGTAGGTTCTATCTTA CACGCGGTGTCTTGCGCGATTGCGGTCGTGGTGTCGAATCGCATCATATA TTATATNTGTACGCTACTACGCCGATGTCAGGCGCGCTTATACAGACATG AGCTATCGAAGTGAGCGAGACCAACGGCTTGTGGAATATGCGTCCTTCGC GCGTGTCGCGCGAAGCGCGGCAGGTATAAGTAGATCCTCTCTATCTGTAC TGTCTACACAGTCGTTAGTATAGTATGACGTCGTATNGTATATGCTGTCT ACAGCGCGTCGGCACGAGCCTCGCGCTTATNTCGCGATGACGACTCTACT CGCTCGATGTAGCCTANCNCTCTATTCGATCAGAGATCTACACGNCGNCG TCTCTCTAANTCGTACTCACAATACATCACGCATCAAACGGCTCGCACGA CGACAACACCACTCTATACGTCTACTAGACACTACTCACCAACGACACC
quality values	Open. Hide. 9 9 9 9 11 15 11 10 10 14 15 17 20 22 19 19 15 15 16 24 27 28 30 33 33 28 29 31 36 30 28 28 28 28 30 27 27 9 9 9 9 11 11 19 12 14 18 20 17 24 39 39 46 36 36 36 36 36 33 41 37 37 59 59 32 24 8 6 6 6 6 6 6 8 10 22 32 31 35 37 37 36 36 37 39 57 44 53 53 53 53 53 53 53 53 53 57 57 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 51 51 51 51 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 68 68 68 57 68 59 59 59 59 59 57 57 52 57 57 57 57 57 68 68 57 57 62 62 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 44 43 35 35 35 38 38 38 43 44 59 57 59 68 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 54 57 57 59 59 59 59 59 59 59 59 57 57 57 59 59 59 59 59 68 59 59 43 43 44 57 57 57 47 47 43 43 46 57 57 57 57 57 68 68 68 59 57 48 48 48 47 48 47 57 54 68 68 68 68 57 68 68 68 68 57 57 57 57 57 48 59 59 59 59 59 48 57 57 48 48 48 48 48 48 48 46 46 59 59 59 59 44 41 41 44 59 44 47 46 41 40 48 48 48 48 57 57 57 59 59 59 48 48 57 57 57 57 57 48 48 48 48 47 50 50 50 47 57 57 57 48 48 48 48 48 59 59 59 47 41 41 41 37 41 43 39 41 41 41 41 47 48 48 48 48 43 43 40 41 41 59 59 59 44 37 37 44 41 41 39 39 32 32 35 39 41 41 41 59 59 59 47 41 16 9 9 9 9 18 22 37 32 36 36 37 37 37 37 37 37 41 41 29 11 11 10 12 9 10 10 21 37 36 36 32 37 37 43 32 32 30 32 31 22 17 10 9 9 18 14 37 32 30 27 24 18 18 18 23 25 20 27 28 30 30 25 25 25 37 37 34 36 39 39 34 31 37 37 32 26 28 18 15 11 13 9 9 9 13 13 19 21 12 12 12 19 21 28 37 32 37 25 16 12 13 12 13 19 19 34 24 24 24 30 26 27 29 32 37 37 37 33 21 21 20 20 18 21 12 14 14 26 21 21 18 14 15 13 19 12 11 11 11 11 10 13 9 10 10 14 11 13 13 14 16 23 23 32 28 28 22 21 17 17 15 21 19 11 11 10 10 10 10 10 13 12 15 14 14 14 28 19 8 8 8 19 8 10 14 14 10 9 9 6 6 6 6 9 7 16 15 9 8 8 8 8 10 8 10 10 12 16 25 32 37 37 30 24 24 18 18 23 18	Open. 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Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no537_k03.b1 MSMg01no537_k03.b1 CHROMAT_FILE:
MSMg01no537_k03.b1 PHD_FILE: MSMg01no537_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:02 2005
         (577 letters)



>mm_chr3_9644720_9645702
          Length = 983

 Score =  859 bits (444), Expect = 0.0
 Identities = 550/606 (90%), Gaps = 42/606 (6%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactctgtagatttc---gctggcctcaaaatcagagatctgcctccttcaagta 61
           ||||||||||||||||   |   |||||||||||||||||||||||||||||||||||||
Sbjct: 187 gaattcactctgtaga---ccatgctggcctcaaaatcagagatctgcctccttcaagta 243

                                                                       
Query: 62  ccgggattaaagtcatacacccccatacaggcct--ctctctctctctctctctctctct 119
           | |||||||||||||||||||| || ||||||||  ||||||||||||||||||||||||
Sbjct: 244 ctgggattaaagtcatacacccacacacaggcctgcctctctctctctctctctctctct 303

                                                                       
Query: 120 ctctctctctaatg-------------agacaagcaatgaagggggatgcgtctaattta 166
           ||||||||||  |              || ||| |||   ||||||||||||||||||||
Sbjct: 304 ctctctctctc-tctctctctctctccaggcaa-caa---agggggatgcgtctaattta 358

                                                                       
Query: 167 caggataagattaccagaccgtctttgaggactgattggacacttggaaaagatcttaaa 226
           | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cgggataggattaccagactgtctttgaggactgattggacacttggaaaagatcttaaa 418

                                                                       
Query: 227 taaacaattgaaa--------tatatatatatatttaattgaaggaaaacagacctagga 278
           |||||||||||||        |||||||||||||||||||||||||| ||||||||||||
Sbjct: 419 taaacaattgaaaaaaaaatatatatatatatatttaattgaaggaatacagacctagga 478

                                                                       
Query: 279 aaataaatactgagccaggc-attcttccaggttcctgtgctcatggcagagagtaggag 337
           |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 479 aaataaatactgagccaggccat-cttccaggttcctgtgctcatggcagagagtaggag 537

                                                                       
Query: 338 gggccagcaagccttggaatataacccacagacaagctagatacccagca------gtcc 391
           |||||||||||||||||||||||||||||||||||||||| | |||||||      ||||
Sbjct: 538 gggccagcaagccttggaatataacccacagacaagctaggtgcccagcaaggcctgtcc 597

                                                                       
Query: 392 accacagagttgctgaagtggggtatttaagtgggaatactgccgggactcatgttgtga 451
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 598 accacagagttgctgaagtggggtatttaagtgggaatactgccggaactcatgttgtga 657

                                                                       
Query: 452 ggtcaggagtatgtgaattcagagagaaacatgaccgcattatttcaggggtctgtgtat 511
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 658 ggtcaggagtatgtgaattcagagagaaacttgaccgcattatttcaggggtctgtgtat 717

                                                                       
Query: 512 tcttgaagaaattatcaatcaagagacagtttaagcagtttatttagccaagtaaacaag 571
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tcttgaagaaattatcaatcaagagacagtttaagcagtttatttagccaagtaaacaag 777

                 
Query: 572 cacttc 577
           ||||||
Sbjct: 778 cacttc 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 983
Length adjustment: 10
Effective length of query: 567
Effective length of database: 973
Effective search space:   551691
Effective search space used:   551691
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information