NGGAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTACACTCTGATGGTTTGTCACGAACTTGCTCCAGGAGG
CCTGGAACTAGCTCTGTGGCCAGGTAGGCCTTGAACTTGCTGTCCTCTTG
CTTCAGCTTGCTGTGTCCACAGGTCCATCTGAAAAAGGATGGTGCAGCCG
GAAAATTGAGGCTCACACTGCGGAATCACAATGAGGCACTCAGGTTTAAC
ATCAACTTTAAAACAATGCACCAGGACTATTGATGTCTCCTTTGGTCTTT
CCATGCACATACATGGGTGCCTACAGATGCACACACATACATATACCACA
CACAAACACACACACACACACACACACACACACACACAATCACAATCACA
CACATACACTCACATACTCTCTTTCTGTGTCTCTGTCTCTTTCTCTCTGA
CACATACACACACACAAAATCACACACACTCACATACTCTCTCTTTGTGT
CCATCTGTCTTTCTCTGATACACACACACACATACACACACACATGCATG
CACACACACACGCACACACACTACAGATTTTTGTGGGTAGGGAGAGGAGG
CAGCCCTTAGAGAGTGTAGTCCTAAGTAAATTTGTAGTGTTGATGTGGAC
ACAGTCATGTTGAGAACCCCAAGACTTTGGGACCATGGGAAAAGGTCAAA
ATTTGGGTCAGACTAAAAAAGGAAAGCTTCTTTTCCTG

NNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTGAATTCAGTGCATGAA
TGTAACTTGTCTATCGTGGCAGTGCAGGTCAGTAATCACAGTGCTTGGAG
GCATAAACAGATCTTCCCTATGGACCAGCCAGTCTAGTCAACAGTGATCT
CTGGGTTCATAGAGGGACCCTGTCTCAAAATTTACAACAGAAAGTGACTG
AAGAAGACACTCAGTGCTCACCTCTGGCTTAGACAAATGCATTCTGGAAT
GCTACACCCACACACACAAATGCATATATATAAGCACAAGCACACACACA
TGCACATGCATACACACACATGCATACACACACATGAACACACATGTGCA
CACACACATGCATGCACCCCCACATAAATGCACGTATACCAGCACACACA
TGCACATACATATACACACACATGAACACACATGCACACACACATGTATG
CACTCCCCACATAAATGAACATACACCAGCACACACACATGCACATGCAT
ATACACACACACATGAACACACATGCACACACACATACACGCATGCACCT
CCACACACAAATGCATACACAGCAGCGTACACACACGCACATGCATGCAC
ACATGCACACATACGCATGCACCTCAAACACACACATGCATATGCACACA
TGTAGATGAACACACATACACACGCACACACAGACACACACT

Query= MSMg01no537_k12.b1 MSMg01no537_k12.b1 CHROMAT_FILE:
MSMg01no537_k12.b1 PHD_FILE: MSMg01no537_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:04 2005
         (554 letters)



>mm_chr3_34377598_34378549
          Length = 952

 Score =  890 bits (460), Expect = 0.0
 Identities = 522/560 (93%), Gaps = 32/560 (5%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttacactctgatggtttgtcacgaacttgctccaggaggcctggaactagctct 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gaattcttacactcagatggtttgtcacgaacttgctccaggaggcctggaactagctct 528

                                                                       
Query: 65  gtggccaggtaggccttgaacttgctgtcctcttgcttcagcttgctgtgtccacaggtc 124
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gtagccaggtaggccttgaacttgctgtcctcttgcttcagcttgctgtgtccacaggtc 468

                                                                       
Query: 125 catctgaaaaaggatggtgcagccggaaaattgaggctcacactgcggaatcacaatgag 184
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 467 catctgaaaaaggatggtgc--ccggaaaattgaggctcacactgcggaatcacaatgag 410

                                                                       
Query: 185 gcactcaggtttaacatcaactttaaaacaatgcaccaggactattgatgtctcctttgg 244
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 409 gcactcaggtttaacatcaactttaaaacgatgcaccaggactattgatgtctcctttgg 350

                                                                       
Query: 245 tctttccatgcacatacatgggtgcctacagatgcacacacatacatataccacacacaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 349 tctttccatgcacatacatgggtgcctacagatgcacacacatacatataccacacaca- 291

                                                                       
Query: 305 acacacacacacacacacacacacacacacacaatcacaatcacacacatacactcacat 364
                          |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ---------------cacacacacacacacacaatcacaatcacacacatacactcacat 246

                                                                       
Query: 365 actctctttctgtgtctctgtctctttctctctgacacatacacacacacaaaatcacac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 actctctttctgtgtctctgtctctttctctctgacacatacacacacacaaaatcacac 186

                                                                       
Query: 425 aca----ctcacatactctctctttgtgtccatctgtctttctctgatacacacacacac 480
           |||    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 185 acatacactcacatattctctctttgtgtccatctgtttttctctgatacacacacacac 126

                                                                       
Query: 481 atacacacacacatgcatgcacacacacac------gcacacacactacagatttttgtg 534
           | |||||||||||  ||  |||||||||||      ||||||||||||||||||||||||
Sbjct: 125 acacacacacaca--ca--cacacacacacatgcacgcacacacactacagatttttgtg 70

                               
Query: 535 ggtagggagaggaggcagcc 554
           ||||||||||||||||||||
Sbjct: 69  ggtagggagaggaggcagcc 50


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 125
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 952
Length adjustment: 10
Effective length of query: 544
Effective length of database: 942
Effective search space:   512448
Effective search space used:   512448
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)