BAC Information

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BAC

Clone NameMSMg01-537P24
Chromosome3 (Build37)
Map Location 105,676,456 - 105,677,046
singlet/doubletsinglet
Overlap geneAdora3
Upstream geneSt7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik, 1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637
Downstream geneI830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537P24.T7 (MSMg01no537_p24.b1)MSMg01-537P24.TJ (MSMg01no537_p24.g1)
ACCAG604835AG604836
length724735
length of high quality
(start - end)
633 (55 - 687)584 (87 - 670)
definitionCHROMAT_FILE: MSMg01no537_p24.b1 PHD_FILE: MSMg01no537_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:32 2005CHROMAT_FILE: MSMg01no537_p24.g1 PHD_FILE: MSMg01no537_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGTTTTTCCCTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCAACTGATTAATAATGAATGGCTGAGAGGCACCTA
AAAAAAATGCTCAATATCCTTAGTCATCAGGGAAATGCAAATCAAAACAA
ACCTGAGATTCCATCTCACACCAGTCAGAATGACTAAGATCAAAAACTCA
AGTGACAGCAGATGTTGGCGAGGATGTGGAGAAAGAGAAACACTCCTCCA
TTGCTGGTGGGATTGCAAGCTGGTACAACCACTCTGGAAATCAGTCTGGC
AGTTCCTCAGAAAATTGGGCTTAAGACTTCTGGTGAGTGGAACACAGCAT
CTGCTCCAATCCAATCGCGCGGGACTTGAGACTGCATTAGTCAGGGAAGC
AAAAACCCGGTCTGAGTAGGGGCACAAGCCCCTTCCGATCCGAGCAGCAC
TGGGGTAGCTAGGGCCCACAGTCGGCTGACTACCTCCAGCTACACACAAC
ACCCGCCAAGCGATCTTAAGACTTCTGGTGAGGGGAACACAGCATCTGCT
CCAATCCAATAGCTCAGGACTTGAGACTGCATTAGTCAGGAAAGCACAAC
CCCTTCCAGTCCGAGCAGCACCGGGGTAGCTAGGGCGCACAGTCGGCTGA
CTACCGCCAGATACCCACAACACCAGCCACGCAATCATAAGAATTCTGAG
GATTGGGAGCTGACCGGCGCTGGA
NTTTTTTTNNCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGAGAGCCATGAC
TATACTTCTGGGTATAGTTCCTAACTATTCATCACCTTTGTGTTCTGATC
ACCAGGCATATGTAGGAAATAATGGGAGGAGAAACAGGGTGGAGAGTAAG
GGGTAGTTGTGTCATTGAGAGCACACACCTGACCGTTCATGTGCTCATAT
ATGCACATATTTATTATTCATCTAAAGAAAGTATGCATGTATACTTAGAT
GTATATGCAAGTGTGTATGGGGGAGGGGGAGCAGAAGTCAACCCCAGGTG
TCATCCTCACCTTCTTTTCCTTTCTGATTGAAACTGGGCCTTGTCACTGG
ATTGGATCCCACCAAGTTGGCTAGGTTGGCTGTGCAGAAAGCTTCAGAGA
TCTGTTTTTCTCTGCCTCCTCAGTGCAGGGATTACAAGCCCAGGCTCACA
CCTAACATTTTAAAGTTCTGTCTTTCTTTTCCAAACATCAGTTCTGGGTA
TTGGACACAGGCCTTTGTGCCTTACAAGGCTAACACTTACAGACTGCACT
ATCCCTGTAGCCTCTTTTTTTCTTTGAGATGGGTTCTTATATAGCTCTGG
CTGGCCTGAAACTTGCTGTAGAGCTGAGACTACCCTTGAACTTGAGAAGC
TCTTGTCTCCATGTGCTTGGATTGCCTGCATTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_p24.g1 MSMg01no537_p24.g1 CHROMAT_FILE:
MSMg01no537_p24.g1 PHD_FILE: MSMg01no537_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:32 2005
         (584 letters)



>mm_chr3_105676256_105677243
          Length = 988

 Score = 1064 bits (550), Expect = 0.0
 Identities = 579/592 (97%), Gaps = 9/592 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggagagccatgactatacttctgggtatagttcctaactattcatcacctttgtgttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggagagccatgactatacttctgggtatagttcctaactattcatcacctttgtgttct 260

                                                                       
Query: 61  gatcaccaggcatatgtaggaaataatgggaggagaaacagggtggagagtaaggggtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatcaccaggcatatgtaggaaataatgggaggagaaacagggtggagagtaaggggtag 320

                                                                       
Query: 121 ttgtgtcattgagagcacacacctgaccgttcatgtgctcatatatgcaca----tattt 176
           |||||||||||||||||||||||||||||||||||||||||||||||||||    |||||
Sbjct: 321 ttgtgtcattgagagcacacacctgaccgttcatgtgctcatatatgcacatacttattt 380

                                                                       
Query: 177 attattcatctaaagaaagtatgcatgt--a--tacttagatgtatatgcaagtgtgtat 232
           ||||||||||||||||||||||||||||  |  | | |||||||||||||||||||| ||
Sbjct: 381 attattcatctaaagaaagtatgcatgtgcatttgcatagatgtatatgcaagtgtgcat 440

                                                                       
Query: 233 gggggagggggagcagaagtcaaccccaggtgtcatcctcaccttcttttcctttctgat 292
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggggg-gggggagcagaagtcaaccccaggtgtcatcctcaccttcttttcctttctgat 499

                                                                       
Query: 293 tgaaactgggccttgtcactggattggatcccaccaagttggctaggttggctgtgcaga 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgaaactgggccttgtcactggattggatcccaccaagttggctaggttggctgtgcaga 559

                                                                       
Query: 353 aagcttcagagatctgtttttctctgcctcctcagtgcagggattacaagcccaggctca 412
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aagcttcagagatccgtttttctctgcctcctcagtgcagggattacaagcccaggctca 619

                                                                       
Query: 413 cacctaacattttaaagttctgtctttcttttccaaacatcagttctgggtattggacac 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cacctaacattttaaagttctgtctttcttttccaaacatcagttctgggtattggacac 679

                                                                       
Query: 473 aggcctttgtgccttacaaggctaacacttacagactgcactatccctgtagcctctttt 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aggcctttgtgccttacaaggctaacacttacagactgcactatccctgtagcctctttt 739

                                                               
Query: 533 tttctttgagatgggttcttatatagctctggctggcctgaaacttgctgta 584
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tttctttgagatgggttcttatatagctctggctggcctgaaacttgctgta 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 988
Length adjustment: 10
Effective length of query: 574
Effective length of database: 978
Effective search space:   561372
Effective search space used:   561372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)