BAC Information

Click to search

BAC

Clone NameMSMg01-538C07
Chromosome3 (Build37)
Map Location 89,815,488 - 89,971,393
singlet/doubletdoublet
Overlap geneUbap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l
Upstream geneAsh1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1
Downstream geneRps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538C07.T7 (MSMg01no538_c07.b1)MSMg01-538C07.TJ (MSMg01no538_c07.g1)
ACCAG604944AG604945
length731747
length of high quality
(start - end)		675 (57 - 731)663 (68 - 730)
definitionCHROMAT_FILE: MSMg01no538_c07.b1 PHD_FILE: MSMg01no538_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:43 2005CHROMAT_FILE: MSMg01no538_c07.g1 PHD_FILE: MSMg01no538_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,970,719 - 89,971,393)(89,815,488 - 89,816,156)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGT
AGTTCGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGATTGCTCTTCC
AAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATC
CATAACAAGATCTGACTCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGT
GTACTTACATATAATAAATAAATAAATCTTAAAAAAAAAAACTCGTTGCT
TTAAAAAAAAAATAAAAAGAATTCAGTAGCTTAGGGCTGACGAGCTATCT
TTGGAGAGAGGATTTATGTTTCCTCTCCTCTTCCCACCTTGATAGTTTTT
AGACGTTGCCTGGCCAGCAGCTGTTAGCATGTGGTGTTATGTGTTTGCAG
CTGTTAGCATGTGGTGTTATATGTTTGCAGCTGTTAGCATGTGGTGTTAT
ATGTTTGCATCTGTTAGCATGTGGTGTTATATGTTTGCATCTGTTAGTAT
GTGGTGTTAAGTGTTTTTTCTTCCTCTTCTCTTTATTCCTCACTTTCAGG
GGGTTGGGGACAGGTTTTTATTTATTGCATTTTTTTTTCTGAATGATGTA
GCTATCATGACACTTTAATCCCCCCAAAATATTCCTAAGAGAGAGAACAC
TTTTTTATGGAAACAAACCAAATAATAATATTATACTTTTATTATATTAT
ATTTTATTTATTATATTATTTTTTTTAGTTG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGGACAGCAAGACAGAAACACACAGGAACCCT
GTGTCTAAAACCAAACAACCAAATAAAAAAACCTTAAGACATTAAAAATA
TCCTAATCATCTGAATAAGCTGACTAGAGCTTCCATTAATTCAAATTACT
CCTGTAATACTGTCAAATTTGCCTTACTAAGAGTAAAGGTTGAAAGCACA
AAATTTTGGGGATTCAGGGGAACTTATCAGTAAATAAGATAAGAAGAGGT
GAGACAGAAAAAAATTAGAAAAAAAAAAAAACAGAGGTTGGGTATATATC
TATGCTATAACACATTATCATTATAAATGTGTATAGTCCCAGATACTTAG
GAAATTGAGGCAGGAGAATATGAGGTCCAGGAGGCTAGCCTGGAAAACGT
GGTAAGATACCTCTCCAACTAATCAAAAGAAAGGTTAAGAATACAGCTCA
GCAGTGAAGTATCTACCTAGCATGCATTAAGTTCTAGGTTCAACCATAAG
GGTCTCTAACAATAATAACAAAACAGAGCAGGAAATTGATGTTGATAGGA
AGCTTGTTAACAGTTTTATTATTAGTCCATTTGAGGTGTTATGTCACATG
TGTTTTGTTAACCTGATTAAATTGCCTGTGTGTGTGTATATGTATGCATA
TATAATAAAGTATATGTGGGGGGCAGACTGAGAAACAGCTGTTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_c07.b1 MSMg01no538_c07.b1 CHROMAT_FILE:
MSMg01no538_c07.b1 PHD_FILE: MSMg01no538_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:43 2005
         (675 letters)



>mm_chr3_89970388_89971462
          Length = 1075

 Score = 1253 bits (648), Expect = 0.0
 Identities = 669/676 (98%), Gaps = 3/676 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    ctggtgagatggctcagtgggtaagagcacccgattgctcttccaaaggtccagagttca 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 ctggtgagatggctcagtgggtaagagcacccgattgctcttccaaaggtccagagttca 947

                                                                        
Query: 61   aatcccagcaaccacatggtggctcacaaccatccataacaagatctgactccctcttct 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946  aatcccagcaaccacatggtggctcacaaccatccataacaagatctgactccctcttct 887

                                                                        
Query: 121  ggtgtgtctgaagacagctacagtgtacttacatataataaataaataaatcttaaaaaa 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886  ggtgtgtctgaagacagctacagtgtacttacatataataaataaataaatcttaaaaaa 827

                                                                        
Query: 181  aaaaactcgttgcttt-aaaaaaaaaataaaaagaattcagtagcttagggctgacgagc 239
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826  aaaaactcgttgctttaaaaaaaaaaataaaaagaattcagtagcttagggctgacgagc 767

                                                                        
Query: 240  tatctttggagagaggatttatgtttcctctcctcttcccaccttgatagtttttagacg 299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766  tatctttggagagaggatttatgtttcctctcctcttcccaccttgatagtttttagacg 707

                                                                        
Query: 300  ttgcctggccagcagctgttagcatgtggtgttatgtgtttgcagctgttagcatgtggt 359
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 706  ttgcctggccagcagctgttagcacgtggtgttatgtgtttgcagctgttagcatgtggt 647

                                                                        
Query: 360  gttatatgtttgcagctgttagcatgtggtgttatatgtttgcatctgttagcatgtggt 419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646  gttatatgtttgcagctgttagcatgtggtgttatatgtttgcatctgttagcatgtggt 587

                                                                        
Query: 420  gttatatgtttgcatctgttagtatgtggtgttaagtgttttttcttcctcttctcttta 479
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 586  gttatatgtttgcatctgttagtatgtggtgttaagagttttttcttcctcttctcttta 527

                                                                        
Query: 480  ttcctcactttcagggggttggggacaggtttttatttattgcatttttttttctgaatg 539
            |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 526  ttcctcactttcagggggttggggacaggtttttatttattgcattttgttt-ctgaatg 468

                                                                        
Query: 540  atgtagctatcatgacactttaatccccccaaaatattcctaagagagagaacacttttt 599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467  atgtagctatcatgacactttaatccccccaaaatattcctaagagagagaacacttttt 408

                                                                        
Query: 600  tatggaaacaaaccaaataataatattatacttttattatattatattttatttattata 659
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407  tatggaaacaaacaaaataataatattatacttttattatattatattttatttattata 348

                            
Query: 660  ttat-tttttttagtt 674
            |||| |||||||||||
Sbjct: 347  ttatatttttttagtt 332


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no538_c07.g1 MSMg01no538_c07.g1 CHROMAT_FILE:
MSMg01no538_c07.g1 PHD_FILE: MSMg01no538_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:43 2005
         (663 letters)



>mm_chr3_89815294_89816356
          Length = 1063

 Score = 1255 bits (649), Expect = 0.0
 Identities = 661/669 (98%), Gaps = 7/669 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   aggacagcaagacagaaacacacaggaaccctgtgtctaaaaccaaacaaccaaataaaa 61
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 195 aggacagcaagacagaaacacacaggaaccccgtgtctaaaaccaaacaaccaaataaaa 254

                                                                       
Query: 62  aaaccttaagacattaaaaatatcctaatcatctgaataagctgactagagcttccatta 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aaaccttaagacattaaaaatatcctaatcatctgaataagctgactagagcttccatta 314

                                                                       
Query: 122 attcaaattactcctgtaatactgtcaaatttgccttactaagagtaaaggttgaaagca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 attcaaattactcctgtaatactgtcaaatttgccttactaagagtaaaggttgaaagca 374

                                                                       
Query: 182 caaaattttggggattcaggggaacttatcagtaaataagataagaagaggtgagacaga 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 caaaattttggggattcaggggaacttatcagtaaataagataagaagaggtgagacaga 434

                                                                       
Query: 242 aaaaaattagaaaaaaaaaaaaa-------cagaggttgggtatatatctatgctataac 294
           |||||||||||||||||||||||       ||||||||||||||||||||||||||||||
Sbjct: 435 aaaaaattagaaaaaaaaaaaaaaaaaaaacagaggttgggtatatatctatgctataac 494

                                                                       
Query: 295 acattatcattataaatgtgtatagtcccagatacttaggaaattgaggcaggagaatat 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 acattatcattataaatgtgtatagtcccagatacttaggaaattgaggcaggagaatat 554

                                                                       
Query: 355 gaggtccaggaggctagcctggaaaacgtggtaagatacctctccaactaatcaaaagaa 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gaggtccaggaggctagcctggaaaacgtggtaagatacctctccaactaatcaaaagaa 614

                                                                       
Query: 415 aggttaagaatacagctcagcagtgaagtatctacctagcatgcattaagttctaggttc 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aggttaagaatacagctcagcagtgaagtatctacctagcatgcattaagttctaggttc 674

                                                                       
Query: 475 aaccataagggtctctaacaataataacaaaacagagcaggaaattgatgttgataggaa 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aaccataagggtctctaacaataataacaaaacagagcaggaaattgatgttgataggaa 734

                                                                       
Query: 535 gcttgttaacagttttattattagtccatttgaggtgttatgtcacatgtgttttgttaa 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gcttgttaacagttttattattagtccatttgaggtgttatgtcacatgtgttttgttaa 794

                                                                       
Query: 595 cctgattaaattgcctgtgtgtgtgtatatgtatgcatatataataaagtatatgtgggg 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 cctgattaaattgcctgtgtgtgtgtatatgtatgcatatataataaagtatatgtgggg 854

                    
Query: 655 ggcagactg 663
           |||||||||
Sbjct: 855 ggcagactg 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |