Query= MSMg01no538_e24.b1 MSMg01no538_e24.b1 CHROMAT_FILE:
MSMg01no538_e24.b1 PHD_FILE: MSMg01no538_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:56 2005
(676 letters)
>mm_chr3_128278508_128279590
Length = 1083
Score = 1205 bits (623), Expect = 0.0
Identities = 661/677 (97%), Gaps = 7/677 (1%)
Strand = Plus / Plus
Query: 5 gaattcctgatgtcagcctttgaaggccagaggtctcagactagacctgggaattacaac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgatgtcagcctttgaaggccagaggtctcagactagacctgggaattacaac 264
Query: 65 aagcaccaagcactgccacaaagtgctagagaatcccaagatcaaggtccacaagacagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagcaccaagcactgccacaaagtgctagagaatcccaagatcaaggtccacaagacagc 324
Query: 125 tgtaacacttgtcactagagggctaaagattgcagtgcctggacccacgcaacagctgtg 184
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 tgtaacacttgtcactagagggctaaagattgcagtgcctggacccacacaacagctgtg 384
Query: 185 acaccacagggtgccatctgtctt----gttggtttgttctccctgccactcacagcaag 240
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 385 acaccacagggtgccatctgtcttacttgttggtttgttctgcctgccactcacagcaag 444
Query: 241 ccaagggttacaaagcttgctaagtgtctgctctggagatctttgcacagcttacctggg 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccaagggttacaaggcttgctaagtgtctgctctggagatctttgcacagcttacctggg 504
Query: 301 agttctgttcatatagaataaacaaaactaggtgcctgattgatgacaaggcgatattta 360
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agttctgttcatacagaaaaaacaaaactaggtgcctgattgatgacaaggcgatattta 564
Query: 361 gatttaata---ttgtcatttttaccactttaaactcttagctagcaatatgtagatgtg 417
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gatttaataatattgtcatttttaccactttaaactcttagctagcaatatgtagatgtg 624
Query: 418 tgttgatttgtatgtatacatgctgtattttaatagaattttatggttaggaatgaaatg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgttgatttgtatgtatacatgctgtattttaatagaattttatggttaggaatgaaatg 684
Query: 478 tccctcaaagacacatgtgtttggatacttggaacatagctggtgggtctatttgtaaaa 537
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tccctcaaagacacatgtatttggatacttggaacatagctggtgggtctatttgtaaaa 744
Query: 538 gttgtagaaacattgatagaactagttagaggaactaatattgacatttgataatctagc 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gttgtagaaacattgatagaactagttagaggaactaatattgacatttgataatctagc 804
Query: 598 tggaggaactgttttcttggtgtaatgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgta 657
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 805 tggaggaactgtttccttggtgtagtgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 864
Query: 658 tgtgtgtgtgtgtgtgt 674
|||||||||||||||||
Sbjct: 865 tgtgtgtgtgtgtgtgt 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1083
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1073
Effective search space: 714618
Effective search space used: 714618
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_e24.g1 MSMg01no538_e24.g1 CHROMAT_FILE:
MSMg01no538_e24.g1 PHD_FILE: MSMg01no538_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:56 2005
(618 letters)
>mm_chr3_128465593_128466611
Length = 1019
Score = 818 bits (423), Expect = 0.0
Identities = 438/443 (98%), Gaps = 1/443 (0%)
Strand = Plus / Minus
Query: 1 atgtcaaaaactaaaaagaaaag-ttataatttatattctttgttgctatagccagagaa 59
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgtcaaaaaccaaaaagaaaagattataatttatattctttgttgctatagccagagaa 385
Query: 60 tggatggaaaacagtacaatggtcaaactggaatcaaccaggaaatggtgttctagagac 119
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgatggaaaacagtacaatggtcaaactggaatcaaccaggaaatggtgttctagagac 325
Query: 120 agaaagacttaaaatgaattcggatagccagggtgtactgctagagccactggctagcct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agaaagacttaaaatgaattcggatagccagggtgtactgctagagccactggctagcct 265
Query: 180 cttggggcttaccaaactaagcctgcatgtctgttgtaccttggtcattggctcttcatc 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 cttggggcttaccaaactaagcctgcatgtctgttgtgccttggtcattggctcttcatc 205
Query: 240 aaagatcttctcttggggactctggctgataacacactcatatccagaacactgattgtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aaagatcttctcttggggactctggctgataacacactcatatccagaacactgattgtt 145
Query: 300 ccggtggctggagaagaaagctcttgaagtcatgggtcacaaagcacacacatcattttt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ccggtggctggagaagaaagctcttgaagtcatgggtcacaaagcacacacatcattttt 85
Query: 360 gtttgtaattgattggccaggactagtcaaccatttgttcaaagagacaagccaaggata 419
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 84 gtttgtaattgattggccaggactagtcaaccatttgttctaagagacaagccaaggata 25
Query: 420 tttggggtaaagtactagtaatt 442
|||||||||||||||||||||||
Sbjct: 24 tttggggtaaagtactagtaatt 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1019
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1009
Effective search space: 613472
Effective search space used: 613472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
