Query= MSMg01no538_k19.b1 MSMg01no538_k19.b1 CHROMAT_FILE:
MSMg01no538_k19.b1 PHD_FILE: MSMg01no538_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:23 2005
(606 letters)
>mm_chr3_51572830_51573836
Length = 1007
Score = 1106 bits (572), Expect = 0.0
Identities = 596/604 (98%), Gaps = 1/604 (0%)
Strand = Plus / Plus
Query: 4 gaattcag-atatacctttcctaactgtgagtcgctcatctctggtatcttgccacatcg 62
|||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcagaataaacctttcctaactatgagtcgctcatctctggtatcttgccacatcg 263
Query: 63 attagaaggccaaataagacaagaggccctcatccccggaagatgatgtccaagaggcaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 attagaaggccaaataagacaagaggccctcatccccggaagatgatgtccaagaggcaa 323
Query: 123 aacggagtcagaaaggcctctggttcacttgtagctgaaagctcgctgctccacctttaa 182
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 aacggagtcagaaaggcctctggttcacttgtagctgaaagcttgctgctccacctttaa 383
Query: 183 tttttgaaaggaatgggagataatgactccaatatggaagactggtttataaatagccgt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttttgaaaggaatgggagataatgactccaatatggaagactggtttataaatagccgt 443
Query: 243 ttgcctcgaatgagtcagaagcttggagcgctaagctgtaaacagcaccaatctcgcttg 302
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgcctcaaatgagtcagaagcttggagcgctaagctgtaaacagcaccaatctcgcttg 503
Query: 303 ttttgcaagcactgtcctggtgagtacaggcaggctggtggactgctttagtggctgcaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 504 ttttgcaagcactgtcctggtgagtacaggcaggctggtggactgctttagtgtctgcaa 563
Query: 363 tattttttggcccctatttgcaaagctggaggaagtccaggcagaaagaaaacatggaat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tattttttggcccctatttgcaaagctggaggaagtccaggcagaaagaaaacatggaat 623
Query: 423 gacattatgatgcctgtaacaagatgcatccaggtggggcaggtgctcggaccagatcta 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gacattatgatgcctgtaacaagatgcatccaggtggggcaggtgctcggaccagatcta 683
Query: 483 gtgttggggctgcatatgtctggatccattggcagataggccagtgtggtgtcacagggt 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtgttggggctgcagatgtctggatccattggcagataggccagtgtggtgtcacagggt 743
Query: 543 ctcatcatctcaagagtcttccttaagtggtaatgactgctaaggagcactaccaactga 602
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 744 ctcatcatctcaagagtcttccttaagtggtaatgactgctaaggagcactaccaaatga 803
Query: 603 catg 606
||||
Sbjct: 804 catg 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1007
Length adjustment: 10
Effective length of query: 596
Effective length of database: 997
Effective search space: 594212
Effective search space used: 594212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_k19.g1 MSMg01no538_k19.g1 CHROMAT_FILE:
MSMg01no538_k19.g1 PHD_FILE: MSMg01no538_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:23 2005
(606 letters)
>mm_chr3_51748338_51749345
Length = 1008
Score = 1094 bits (566), Expect = 0.0
Identities = 597/608 (98%), Gaps = 2/608 (0%)
Strand = Plus / Minus
Query: 1 tcccaaagctcacatgtcaactgaccaggcccatacagtggtgaacaagagactctgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 tcccaaagctcacatgtcaactgaccaggcccatacagtggtgaacaagagactctgact 911
Query: 61 ctgtctcaaacaaggcaatgtagaagactgatatccaatgttgtcctctggccacacatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 ctgtctcaaacaaggcaatgtagaagactgatatccaatgttgtcctctggccacacatg 851
Query: 121 gggcatggtaagtgaacgcccaggaaaatgcatgcatgcatgcactaatacacacatgca 180
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 850 gggcatggtaagtgaacgcccaggaaaatgcatgcatgcgtgcactaatgcacacatgca 791
Query: 181 tgcactaatgcacacatgcacagcgttttttaaaagcggtgcttacctggaaggactcag 240
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 790 tgcactaatgcacacatgcacagcgtttttaaaaagcggtgcttacctggaaggacccag 731
Query: 241 gaatcatctactttgactccttcattttacaagtgggaaaactgagtcaagtcatggaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gaatcatctactttgactccttcattttacaagtgggaaaactgagtcaagtcatggaca 671
Query: 301 ttacttagctacttttctgtgtttgtactttttctcaatgacattagaaggccataaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ttacttagctacttttctgtgtttgtactttttctcaatgacattagaaggccataaaga 611
Query: 361 gatgaaactctatcttatattcttcaggatcctctg--attgcagttaacatggtatgta 418
|||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||
Sbjct: 610 gatgaaactctatcttatattcttcaggatcccctgcgattgtagttaacatggtatgta 551
Query: 419 agcgacagatacttattaagttcaactaaatgtaaaagaaaactgaatttttttggttag 478
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 550 agtgacagatacttattaagttcaactaaatgtaaaagaaaactaaatttttttggttag 491
Query: 479 tgcattttcttttattttttctttttgtttttgcttttcttggtttggttaggttttggt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tgcattttcttttattttttctttttgtttttgcttttcttggtttggttaggttttggt 431
Query: 539 ttattgagagagggcctctttatgtaacagtcttgtaacttactatattgaacattctgg 598
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 430 ttattgagagagggcctctttatgtaacaatcttgtaacttactatattgaacattctgg 371
Query: 599 tctccaac 606
||||||||
Sbjct: 370 tctccaac 363
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1008
Length adjustment: 10
Effective length of query: 596
Effective length of database: 998
Effective search space: 594808
Effective search space used: 594808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
