BAC Information

Click to search

BAC

Clone NameMSMg01-538M12
Chromosome3 (Build37)
Map Location 97,082,211 - 97,082,821
singlet/doubletsinglet
Overlap genenone
Upstream geneFcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9
Downstream geneOlfr1402, Chd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538M12.T7 (MSMg01no538_m12.b1)MSMg01-538M12.TJ (MSMg01no538_m12.g1)
ACCAG605428AG605429
length730639
length of high quality
(start - end)
612 (58 - 669)206 (72 - 277)
definitionCHROMAT_FILE: MSMg01no538_m12.b1 PHD_FILE: MSMg01no538_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:31 2005CHROMAT_FILE: MSMg01no538_m12.g1 PHD_FILE: MSMg01no538_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
ATGTAGACCAGACTGGCCCTGAACTCACAGAGATCCGCCTGCCTCTGTCT
TCCAAGTGCTAGGATTAAAGGCGTGCGCCATCATGCTCAGCCTAATTCCT
GGTTTTACAGACCCAACTATCATTCCACAGCCAAGGAATCGCCACAGTAA
TCTTTTTCAAGAAATATTTTACAATTTTTGTATCTCTGAGATATCAACAG
AGAAGGTGAGTGTTGGCTTCTGTTCTTAAAGATGAGTGAGGCGTCTGCTG
TCTTGCCTTTGATTCTCTGAGGGAAGGTAGCAGAGTGTGTCTCTCTATTG
CAAAACTGGGGTCAGAAGTACTCCCCTATCATTTGGGAAATAGGGGTCCT
GAGTGAGCTAAATCAGGAAAACACACCCGGGGCACACAGGCTGCAAGCCG
GTTACGGTGGCATGTGAGATGTGAAATACCTGTCGTTCTTTCAAACTGGC
TAGAGAACTGTGGGGTGACATTGAATGACAGGCAAATCAGGTGATCTGGT
CAATTAGCCCCTACAGGATTTCTTATTACCTCCCAAGCCCACCCTGCTCT
GTTTGGTTAAAGCTATAGATTTTTGAATAGGTCATTAGAGGATAAAAACC
AGGAATGATCTTTTGCTAAGCATCTCATTACNAAGCTGACACTTAAACTG
CTGACAGATTTAAAAAAAAAAAAATCTCAT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAA
GCACCTGAAAAAATGTTCAACATCTCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAA
AAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGGGAACAC
TCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAAACCACTCTGGGAAAT
CAGTCTGGCGGGTTCTCAGAAAAATTGAACATAGTACTAACCGGGAAGGA
AACCCCGAAAACCTCCCCTGGGGCATAATTCCAAAAAAAAGTTCTTCACT
GGGGCAAAAAAGGAAAATGGGTTCAACAATGGTCCAATAAAGCCCTTTTT
TTTTATAAAACCCCAAAACTCGGGAAAAAAACCCCCAAAAGCCCCCTCCC
CCAGAGAGAGAGGGGGGTCCCCAAAAAAGGGGGGGGGACCTTTTTTCCCC
CGGGGGGAAAAACCCCCCCTCCCTTTTTTTAAAAAAGAAAATTTTTTTTT
AAAAAATTCTTCTTCCCCAAAAGAGGGGGGGGCCCCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_m12.b1 MSMg01no538_m12.b1 CHROMAT_FILE:
MSMg01no538_m12.b1 PHD_FILE: MSMg01no538_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:31 2005
         (612 letters)



>mm_chr3_97082011_97083021
          Length = 1011

 Score = 1137 bits (588), Expect = 0.0
 Identities = 606/612 (99%), Gaps = 1/612 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagactggccctgaactcacagagatccgcctgcctctgtcttccaagtgctaggatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagactggccctgaactcacagagatccgcctgcctctgtcttccaagtgctaggatta 260

                                                                       
Query: 61  aaggcgtgcgccatcatgctcagcctaattcctggttttacagacccaactatcattcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggcgtgcgccatcatgctcagcctaattcctggttttacagacccaactatcattcca 320

                                                                       
Query: 121 cagccaaggaatcgccacagtaatctttttcaagaaatattttacaatttttgtatctct 180
           ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 cagcccaggaatcgccacagtaatctttttcaagaaatattctacaatttttgtatctct 380

                                                                       
Query: 181 gagatatcaacagagaaggtgagtgttggcttctgttcttaaagatgagtgaggcgtctg 240
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 381 gagatatcaacag-gaaggtgagtgttggcttctgttcttaaagatgagtgaggtgcctg 439

                                                                       
Query: 241 ctgtcttgcctttgattctctgagggaaggtagcagagtgtgtctctctattgcaaaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctgtcttgcctttgattctctgagggaaggtagcagagtgtgtctctctattgcaaaact 499

                                                                       
Query: 301 ggggtcagaagtactcccctatcatttgggaaataggggtcctgagtgagctaaatcagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggggtcagaagtactcccctatcatttgggaaataggggtcctgagtgagctaaatcagg 559

                                                                       
Query: 361 aaaacacacccggggcacacaggctgcaagccggttacggtggcatgtgagatgtgaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaaacacacccggggcacacaggctgcaagccggttacggtggcatgtgagatgtgaaat 619

                                                                       
Query: 421 acctgtcgttctttcaaactggctagagaactgtggggtgacattgaatgacaggcaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acctgtcgttctttcaaactggctagagaactgtggggtgacattgaatgacaggcaaat 679

                                                                       
Query: 481 caggtgatctggtcaattagcccctacaggatttcttattacctcccaagcccaccctgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 caggtgatctggtcaattagcccctacaggatttcttattacctcccaagcccaccctgc 739

                                                                       
Query: 541 tctgtttggttaaagctatagatttttgaataggtcattagaggataaaaaccaggaatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tctgtttggttaaagctatagatttttgaataggtcattagaggataaaaaccaggaatg 799

                       
Query: 601 atcttttgctaa 612
           ||||||| ||||
Sbjct: 800 atctttttctaa 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1011
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1001
Effective search space:   602602
Effective search space used:   602602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)