Query= MSMg01no538_o10.b1 MSMg01no538_o10.b1 CHROMAT_FILE:
MSMg01no538_o10.b1 PHD_FILE: MSMg01no538_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:40 2005
(682 letters)
>mm_chr3_57184577_57185658
Length = 1082
Score = 1145 bits (592), Expect = 0.0
Identities = 656/678 (96%), Gaps = 2/678 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtggaaagagctataggcctagtgatgagaaatggtactgaaaaagtgttaac 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcagtgggaagagctataggcctagtgatgagaaatggtactgaaaaagtgttaac 266
Query: 65 ataaaaacaaaaaaactaggcctttaggcccaggcttgagaatgtgacctttgtgactca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ataaaaacaaaaaaactaggcctttaggcccaggcttgagaatgtgacctttgtgactca 326
Query: 125 atgttccaaggcatgctaatcataaaacagatactgacattcctccacccacctgcttcc 184
||| || ||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 327 atgctctaaggcatgctaatcataaaacagatacggatattcctccacccacctgcttcc 386
Query: 185 tgggttcggggagtgttgttcaaagaaagtcaccctgacccaccctgactgctcctagaa 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 387 tgggttcggggagtgttgttcaaagaaagtcaccctgacccaccctgactgctcctggaa 446
Query: 245 cccactttgcaaatgtgctactgttagagactcatagaaactgtcttgactcccactccc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cccactttgcaaatgtgctactgttagagactcatagaaactgtcttgactcccactccc 506
Query: 305 tcttaactcttaactggtattttttgtattttccaacaatgccctccccaccctcttgag 364
|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 507 tc--aactcttaactggtattttttgtattttccaacaatgccctccccacccccttgag 564
Query: 365 ttgtgttttcttcctttaaataccccttccaccagctactctgggcccacatggtcctct 424
||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 565 ttgtgctttcttcctttaaataccccctccaccagctactctgggcccacacggtcctct 624
Query: 425 acccttcgtggtgtatgaccatggtccctagagcactcttgaaataaaagtcctcttgtg 484
||||| |||||||||||||| ||| ||| |||||||||||||||||||||||||||||||
Sbjct: 625 accctgcgtggtgtatgaccgtgggccccagagcactcttgaaataaaagtcctcttgtg 684
Query: 485 gtttgcatcaagaccgtttctcatgagtgatttggggtgtcgcctcttctgagtcagaac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtttgcatcaagaccgtttctcatgagtgatttggggtgtcgcctcttctgagtcagaac 744
Query: 545 atgggggagtcctcacattgtgagtctttcagtaccaaactttgtgctcacaatcccctt 604
|||||||| ||||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 745 atgggggaatcctcacgttatgagtctttcagtaccagactttgtgctcacaatcccctt 804
Query: 605 agactgttcttaaacaatgacagggtacacagggtttcctctccctctccaggttttgct 664
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 805 agactgttcttaaacaatgacagggtacacatggtctcctctccctctccaggttttgct 864
Query: 665 cttcctacatctctagaa 682
||||||||||||||||||
Sbjct: 865 cttcctacatctctagaa 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_o10.g1 MSMg01no538_o10.g1 CHROMAT_FILE:
MSMg01no538_o10.g1 PHD_FILE: MSMg01no538_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:40 2005
(634 letters)
>mm_chr3_57228176_57229209
Length = 1034
Score = 1137 bits (588), Expect = 0.0
Identities = 620/634 (97%), Gaps = 7/634 (1%)
Strand = Plus / Minus
Query: 1 aggcctggcgtttttaaaggataaaatcagaacagctatttgttttactgcccgactgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 aggcctggcgtttttaaaggataaaatcagaacagctatttgttttactgcccgactgct 675
Query: 61 gtatttctttatttgtttactcaattaggtaattaaataccatgttcttcccaacacgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gtatttctttatttgtttactcaattaggtaattaaataccatgttcttcccaacacgtc 615
Query: 121 atagaatcggcaaaaccaacttttctaattggattattttgttacttcatacagaaatag 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 614 atagaatcggcaaaaccaacttttctaattggattgttttgttacttcatacagaaatag 555
Query: 181 aaacctgtgtctaaagggcaaggcaagagagccctgggagaagctagatgctaatggagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aaacctgtgtctaaagggcaaggcaagagagccctgggagaagctagatgctaatggagg 495
Query: 241 tagagaggaggagactggaggcagctagaaagcgggagggagggagaaaaacaaacccat 300
||||||||||||||||||||||||||||||| ||| ||||||| || |||||||||||||
Sbjct: 494 tagagaggaggagactggaggcagctagaaatcggaagggaggaaggaaaacaaacccat 435
Query: 301 gcagaggttttgccgccttacaggagcacggttcagttactagtttgctttgtgtcattt 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gcagaggctttgccgccttacaggagcacggttcagttactagtttgctttgtgtcattt 375
Query: 361 aagttgtctcagacacacttacaccagctccacacgatgcattgacctatcctggtactg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aagttgtctcagacacacttacaccagctccacacgatgcattgacctatcctggtactg 315
Query: 421 tgtgatgagtcagccagaggactatggggtgaggaagagaattagctctttactgacagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tgtgatgagtcagccagaggactatggggtgaggaagagaattagctctttactgacagt 255
Query: 481 ctagaggtcaaaactaaggacaataagtaaaatatttaggggttggaattgttgcaaaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctagaggtcaaaactaaggacaataagtaaaatatttaggggttggaattgttgcaaaaa 195
Query: 541 caaaaacaaaaataaaagcaaagcaaaacaaaacaaaaacaacaactataaaaccaagca 600
|||||| |||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 194 caaaaa------taaaagcaaagcaaaacaaaacaaaa-caacaacaataaaaccaagca 142
Query: 601 actgacacctaactgtcatggagcacttgctcct 634
||||||||||||||||||||||||||||||||||
Sbjct: 141 actgacacctaactgtcatggagcacttgctcct 108
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
