Query= MSMg01no538_o21.b1 MSMg01no538_o21.b1 CHROMAT_FILE:
MSMg01no538_o21.b1 PHD_FILE: MSMg01no538_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:42 2005
(628 letters)
>mm_chr3_53329940_53330968
Length = 1029
Score = 1187 bits (614), Expect = 0.0
Identities = 623/626 (99%), Gaps = 3/626 (0%)
Strand = Plus / Plus
Query: 5 gaatt-aaagtttttttt-atatgtgcaaggagtccggcagccatcacgccagtttgaac 62
||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaag-ttttttttatatgtgcaaggagtccggcagccatcacgccagtttgaac 263
Query: 63 cggaggggcaaacacagatgcactccttgaatttgcctcttctgacactagaaatgaatc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cggaggggcaaacacagatgcactccttgaatttgcctcttctgacactagaaatgaatc 323
Query: 123 ttgtcagttgcaggttttggcgcttcactcccttctgttatgggatatcaaccagacata 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgtcagttgcaggttttggcgcttcactcccttctgttatgggatatcaaccagacata 383
Query: 183 tagctacattctactttattgatctccatcagaggatgatttgctaccgtaagtttggaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagctacattctactttattgatctccatcagaggatgatttgctaccgtaagtttggaa 443
Query: 243 ctcttatgcaaaaatgcatctataaacttatttttaaatcatttagaggaagctaggatg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctcttatgcaaaaatgcatctataaacttatttttaaatcatttagaggaagctaggatg 503
Query: 303 aacattaaagaagcaaaaccaagcatatttagcaatgacatggtgcagttccaatgtctt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aacattaaagaagcaaaaccaagcatatttagcaatgacatggtgcagttccaatgtctt 563
Query: 363 caaaataattagatgaactgttttagaatttcatattttccttcttttggtagtcaacag 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caaaataattagatgaactgttttagaatttcatattttccttcttttggtagtcaacag 623
Query: 423 atgaggtaagggaagtcgggaggataaattaatccctgtcaagtacctaccgaatttcag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atgaggtaagggaagtcgggaggataaattaatccctgtcaagtacctaccgaatttcag 683
Query: 483 acaatgtattggttattaataacagctttattattttattctcataattgaatctgtgtg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acaatgtattggttattaataacagctttattattttattctcataattgaatctgtgtg 743
Query: 543 tatgcaaggtggtttgacgggcgaatggatgatggacagaaaagaagcaggagagggaac 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tatgcaaggtggtttgacgggcgaatggatgatggacagaaaagaagcaggagagggaac 803
Query: 603 tcgaaaaggactcaggcgagctcacc 628
||||||||||||||||||||||||||
Sbjct: 804 tcgaaaaggactcaggcgagctcacc 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1029
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1019
Effective search space: 629742
Effective search space used: 629742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_o21.g1 MSMg01no538_o21.g1 CHROMAT_FILE:
MSMg01no538_o21.g1 PHD_FILE: MSMg01no538_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:42 2005
(567 letters)
>mm_chr3_53501196_53502162
Length = 967
Score = 1027 bits (531), Expect = 0.0
Identities = 558/567 (98%)
Strand = Plus / Minus
Query: 1 aggcaggtcagaaagcaggagctgatgcaaaggccatggagggatgttcattactggctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 aggcaggtcagaaagcaggagctgatgcaaaggccatggagggatgttcattactggctt 795
Query: 61 gcttcccctggcttgcttagcctgctctcttatagaaccaagattaccagcccagagatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 gcttcccctggcttgcttagcctgctctcttatagaaccaagattaccagcccagagatg 735
Query: 121 gtcccacccacatggggcattttccccttgatcactaattgagaaaatgccttccagttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 734 gtcccacccacatggggcattttccccttgatcactaattgagaaaatgccttacagttg 675
Query: 181 gatcttatggaagcatttcctcaactgaagctcctttttctgtgataactccagctgtgt 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gatcttatggaggcatttcctcaactgaagctcctttttctgtgataactccagctgtgt 615
Query: 241 caagttgacacaaaactagccggtacacacagcaatagaaatcctaactaaaataccaat 300
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 614 caagttgacacaaaactagccagtacacacagcaatagaaatcctaactaaaataccaac 555
Query: 301 gatgtgtatgaagagagtttcaaggacacccactcaaggttgtaggtacttgagtggaca 360
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 554 gttgtgtatgaagagagtttcaagaacacccactcaaggttgtaggtacttgagtggaca 495
Query: 361 tagtaacgttcctatctacaataaattttgctccttcagtaggtggagacaaagagagac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tagtaacgttcctatctacaataaattttgctccttcagtaggtggagacaaagagagac 435
Query: 421 ccagagctggacaacgtgcagaagagcgagaggcacatggaacactcagtctaaaagggg 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ccagagctggacaatgtgcagaagagcgagaggcacatggaacactcagtctaaaagggg 375
Query: 481 gtgtgtctccatcaaatccctcccctcagggctgggggaactctgtggaagaggagacag 540
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 374 gtgtgtctccatcaagtccctcccctcagggctgggggaactctgtggaaaaggagacag 315
Query: 541 aaagattgtaagaagttgtcttttaga 567
|||||||||||||||||||||||||||
Sbjct: 314 aaagattgtaagaagttgtcttttaga 288
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
