Query= MSMg01no539_e13.b1 MSMg01no539_e13.b1 CHROMAT_FILE:
MSMg01no539_e13.b1 PHD_FILE: MSMg01no539_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:11 2005
(571 letters)
>mm_chr3_58859150_58860120
Length = 971
Score = 1073 bits (555), Expect = 0.0
Identities = 567/571 (99%)
Strand = Plus / Plus
Query: 1 caggctaactttatagattctggagacaggcttcaacctagaactgtctccatattttca 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 caggctaactttatagattctggagacaggcttcaagctagaactgtctccatattttca 260
Query: 61 gtgttctttagatctcatttctcacaaggacacgggtgggaatcaggaactttgcaggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgttctttagatctcatttctcacaaggacacgggtgggaatcaggaactttgcaggct 320
Query: 121 cagttctcttctttgactttttcatgggttctgggaccaggtttagctcaccaggcttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagttctcttctttgactttttcatgggttctgggaccaggtttagctcaccaggcttgg 380
Query: 181 gtggcaagttcctcagcccactgagcaatcttgctcattctgttattgttaatatacact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggcaagttcctcagcccactgagcaatcttgctcattctgttattgttaatatacact 440
Query: 241 ctttcattttgagtttctttaaatttcacattttcaacatgcagtacagcgccatcttaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttcattttgagtttctttaaatttcacattttcaacatgcagtacagcgccatcttaa 500
Query: 301 cacttattaatacacagaagtttgttcattcctttatattctctttaccctcagccattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacttattaatacacagaagtttgttcattcctttatattctctttaccctcagccattt 560
Query: 361 cttgctagcttgttatttttgcaaaagtttgcaaatacatgcatcctttttcctttcatc 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgctagcttgttatttttgcagaagtttgcaaatacatgcatcctttttcctttcatc 620
Query: 421 tctatgtaaaagatggtttactacataccttacaatagcctgtcttccttgactccatag 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 tctatgtaaaagatggtttactacataccttacaatagactgtcttccttgactccatag 680
Query: 481 atcctggagattccctggtagtcttacgacttcttaggcttttgttgtgtaggtttactg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atcctggagattccctggtagtcttacgacttcttaggcttttgttgtgtaggtttactg 740
Query: 541 ttgtctgttgggatactcactaattaataga 571
||||||||||||||||||||| |||||||||
Sbjct: 741 ttgtctgttgggatactcactcattaataga 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_e13.g1 MSMg01no539_e13.g1 CHROMAT_FILE:
MSMg01no539_e13.g1 PHD_FILE: MSMg01no539_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:11 2005
(472 letters)
>mm_chr3_59043600_59044470
Length = 871
Score = 866 bits (448), Expect = 0.0
Identities = 466/472 (98%), Gaps = 1/472 (0%)
Strand = Plus / Minus
Query: 1 tccacactgcaattaacactcaaaactccatcacttaggctgatttgactagaaaaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tccacactgcaattaacactcaaaactccatcacttaggctgatttgactagaaaaaaaa 612
Query: 61 aagaaaaggctaggcagagaagtttaagtcaacacaaagtttcacaacttccattagttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aagaaaaggctaggcagagaagtttaagtcaacacaaagtttcacaacttccattagttg 552
Query: 121 acatggactgccaagttcactagtttggaaagaagtaactcttcagtgcagggaatctgc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 551 acatggactgccaagttcactagtttggaaagaagtaactcttcagtgcaggaaatctgc 492
Query: 181 tgaatttgatgaagccgtggtttggaatcccattcctcttctttgtactacagacaaatt 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tgagtttgatgaagccgtggtttggaatcccattcctcttctttgtactacagacaaatt 432
Query: 241 tatcttggcttcttatgtacgaagatgaaaatccattccctgtagaggcatcctttataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tatcttggcttcttatgtacgaagatgaaaatccattccctgtagaggcatcctttataa 372
Query: 301 taatgccagcctttcaagagtaccaacaccacagccactttcttcccttccaaaccatgg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 371 taatgccagcctttcaagagtaccaacaccacagccactttcttcccttccaaaccat-g 313
Query: 361 gctcctctgtccatacaagatggccatcagtatggcatagaagacaacacctgtggcccg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gctcctctgtccatacaagatggccatcagtatggcatagaagacaacacctgtggccca 253
Query: 421 tccatacatgtgtctgattccaccaccaccctgtatccgacataggactcca 472
||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 252 tccatacatgtgtctgactccaccaccaccctgtatccgacacaggactcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 871
Length adjustment: 10
Effective length of query: 462
Effective length of database: 861
Effective search space: 397782
Effective search space used: 397782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
