Query= MSMg01no540_c03.b1 MSMg01no540_c03.b1 CHROMAT_FILE:
MSMg01no540_c03.b1 PHD_FILE: MSMg01no540_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:18 2005
(198 letters)
>mm_chr3_84069016_84069613
Length = 598
Score = 368 bits (190), Expect = e-106
Identities = 193/194 (99%)
Strand = Plus / Plus
Query: 4 ggaattcactgttgtacattgctcaatgtgcctcattaagaaagaaaaattatggttgaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactgttgtacattgctcaatgtgcctcattaagaaagaaaaattatggttgaa 263
Query: 64 atggtatgcaggaaagtcagtgtatgctccctccacctacaggatcagtgctgcctgctg 123
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atggtatgcaggaaagtcactgtatgctccctccacctacaggatcagtgctgcctgctg 323
Query: 124 cctgcagcattaactctgtactccacatgcacattgatgctctcccttacttacagcatc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctgcagcattaactctgtactccacatgcacattgatgctctcccttacttacagcatc 383
Query: 184 aatgttgtccccac 197
||||||||||||||
Sbjct: 384 aatgttgtccccac 397
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space: 112100
Effective search space used: 112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no540_c03.g1 MSMg01no540_c03.g1 CHROMAT_FILE:
MSMg01no540_c03.g1 PHD_FILE: MSMg01no540_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:18 2005
(527 letters)
>mm_chr3_84211766_84212697
Length = 932
Score = 959 bits (496), Expect = 0.0
Identities = 521/532 (97%), Gaps = 5/532 (0%)
Strand = Plus / Minus
Query: 1 ctggctgctcaaaaccaccttgcagttcatcaatgcttcttgctgccctagccctgccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ctggctgctcaaaaccaccttgcagttcatcaatgcttcttgctgccctagccctgccat 673
Query: 61 agaaccgaaatgttcttcccaagttgggcgaggagctaggaaattagaagaagcagcttc 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 agaaccgaaatgttcttcacaagttgggcgaggagctaggaaattagaagaagcagcttc 613
Query: 121 aagctttcaagcactaacattttagcaaacaatcccaaaactgcctgctcccacccaacc 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 612 aagctttcaagcactaacattttagcaaacaatcccgaaactgcctgctcccacccaccc 553
Query: 181 ccc-----ccccccgtagttaaagatgaaccagaagagcctcctgcgcccctcaactggc 235
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 552 cccccccaccccccgtagttaaagatgaaccagaagagcctcctgcggccctcaactggc 493
Query: 236 cacagagctaacggcaggagtaaatataaccagccactggcccaaagctaacaagagcta 295
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cacagagctaacggctggagtaaatataaccagccactggcccaaagctaacaagagcta 433
Query: 296 aaaggtaagcttgagataatccagttagctattgtctgtctcagacacccaccagtggcc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaaggtaagcttgagataatccagttagctattgtctgtctcagacacccaccagtggcc 373
Query: 356 caaggaagtgaagtgtggttttttacacacaaggctcacaccatcctaggcaaaacacag 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 caaggaagtgaagtgtggttttttacacacaaggctcacaccatcctaggcaaaacacag 313
Query: 416 ccttcaggtctgctccagtgaaaaactcaacagaaaccgtcgatggctccaccccgagtc 475
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ccttcaggtctgctccaatgaaaaactcaacagaaaccgtcgatggctccaccccgagtc 253
Query: 476 tctttctcccttcttgcaaggtgaactaccatttctttgcacactggcttcc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tctttctcccttcttgcaaggtgaactaccatttctttgcacactggcttcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 932
Length adjustment: 10
Effective length of query: 517
Effective length of database: 922
Effective search space: 476674
Effective search space used: 476674
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
