Query= MSMg01no540_p16.b1 MSMg01no540_p16.b1 CHROMAT_FILE:
MSMg01no540_p16.b1 PHD_FILE: MSMg01no540_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:27 2005
(198 letters)
>mm_chr3_114819208_114819805
Length = 598
Score = 354 bits (183), Expect = e-102
Identities = 192/195 (98%), Gaps = 1/195 (0%)
Strand = Plus / Minus
Query: 4 ggaattcactgtgaccttgcaactgagagatcccatggctcttttccccaaggctgggat 63
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ggaattcactgtgaccttg-aactgagagatcccatggctcttttccccaaggctgggat 424
Query: 64 taaagatgtgcaccatcccatctgggcttactgattattccatttaatagcacagatatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 taaagatgtgcaccatcccatctgggcttactgattattccatttaatagcacagatatt 364
Query: 124 acggttctagatttagaaaggaagaaattatataacacaacttctagggaagaatataac 183
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 363 acggttctagatttagaaaggaagaaattatatagcacagcttctagggaagaatataac 304
Query: 184 gtgatcataatattg 198
|||||||||||||||
Sbjct: 303 gtgatcataatattg 289
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space: 112100
Effective search space used: 112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no540_p16.g1 MSMg01no540_p16.g1 CHROMAT_FILE:
MSMg01no540_p16.g1 PHD_FILE: MSMg01no540_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:27 2005
(567 letters)
>mm_chr3_114743940_114744906
Length = 967
Score = 926 bits (479), Expect = 0.0
Identities = 531/557 (95%), Gaps = 18/557 (3%)
Strand = Plus / Minus
Query: 12 ctaggaccagtgtgactcttttttcctgctgcctgctaattgagatgtaaaactctcagc 71
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 ctaggaccagtgtaa--cttttttcctgctgcctgctaattgagatgtaaaactctcagc 910
Query: 72 tacctctctaataccaaatctcattctttccattgtaatgataatcgactagacctttga 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 tacctctctaataccaaatctcattctttccattgtaatgataatcgactagacctttga 850
Query: 132 actataagccagtctgaattgaatatttttctttattaaagttgccactggtaatgctgt 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 actataagccagtctgaattgaatatttttctttattaaagttgccactggtaatgctgt 790
Query: 192 ctcttacagcaaaagaaaccataagtaagacacagtcctaaagattatatacatagatac 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ctcttacagcaaaagaaaccataagtaagacacagtcctaaagattatatacatagatac 730
Query: 252 taacattcacctttcaaaaatattttattggttatgttatttatttatacttcaaatgtc 311
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 729 taacattcacctttcaaaaatattttattggttatgttatttatttatatttcaaatgtg 670
Query: 312 gttccccttcctagtttcc-cctccacataagtttttaatgaaaagtagttgtgacatga 370
||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gttccccttcccag-ttcctcctccacataagtttttaatgaaaagtagttgtgacatga 611
Query: 371 tattaagtgaggcaaggctagtccctgctacctgtaaggtttaagactcacacagccata 430
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 610 tattaagtgaggcaaggctagtccctgctacctgtaaggtttaagactcgcacagccata 551
Query: 431 tagaggtaagatcacacacacacacacacacacacacacacacacacacacacacacacc 490
||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct: 550 tagaggtaagatcacacacacacacacacacacacacacac-------------ccca-c 505
Query: 491 acatctgacactcaggcaaacacataagaaagcttttttttttgcaggaagtatcatgat 550
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 504 acatctgatactcaggcaaacacataagaaagcttttttttttgcaggaagtatcgtgat 445
Query: 551 cgagttttactagtgtt 567
|||||||||||||||||
Sbjct: 444 cgagttttactagtgtt 428
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
