Query= MSMg01no541_c10.b1 MSMg01no541_c10.b1 CHROMAT_FILE:
MSMg01no541_c10.b1 PHD_FILE: MSMg01no541_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:41 2005
(707 letters)
>mm_chr3_143692933_143694039
Length = 1107
Score = 1342 bits (694), Expect = 0.0
Identities = 700/702 (99%)
Strand = Plus / Plus
Query: 5 gaattcatcattttcaccccataaaaatcaaaccttaaaaatcctaacgtcaacgtatat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcattttcaccccataaaaatcaaaccttaaaaatcctaacgtcaacgtatat 264
Query: 65 gctttcccaaatcggttctatttcatacctactttttaaaataccattagtgacaagccc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctttcccaaatcggttctatttcatacctactttttaaaataccattagtgacaagccc 324
Query: 125 cttccgctccactcgagacccagggtaccttgccagcggagtcccccgacacccacaagg 184
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 cttccgctccactcgagacccagggtaccttgccagcggagtcgcccgacacccacaagg 384
Query: 185 gcccacacaggatcccccacgagatcctaagacctctggtgagtggaacacagcgcctgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcccacacaggatcccccacgagatcctaagacctctggtgagtggaacacagcgcctgc 444
Query: 245 cccaatccaatcgcgtggaacctgagactgcagtaaatagggaagcagactacccaggcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cccaatccaatcgcgtggaacctgagactgcagtaaatagggaagcagactacccaggcc 504
Query: 305 tgacctggggcacaagtcccttccactccactcgagcaccagggtaccttgccagcggag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgacctggggcacaagtcccttccactccactcgagcaccagggtaccttgccagcggag 564
Query: 365 tcgcctgacacccacaagggcccacacaggattccacatgggatcctaagacctctagcg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcgcctgacacccacaagggcccacacaggattccacatgggatcctaagacctctagcg 624
Query: 425 agtggaacacaacttctgccaggaggccagttcaaacaccagataacttccctgcaagaa 484
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 625 agtggaacacaacttctgccaggaggccagttcaaacaccagataccttccctgcaagaa 684
Query: 485 gagagcttgcctgcagagaatactctgcccactgaaactaaggagagagctaccctccca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gagagcttgcctgcagagaatactctgcccactgaaactaaggagagagctaccctccca 744
Query: 545 ggtctgcttatagaggctagcagagtcacctgaagaacaagctcttaacagagacaacta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggtctgcttatagaggctagcagagtcacctgaagaacaagctcttaacagagacaacta 804
Query: 605 taacagctagcttcagagattaccagatggcgaaaggcaaacgtaagaatcctactaaca 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 taacagctagcttcagagattaccagatggcgaaaggcaaacgtaagaatcctactaaca 864
Query: 665 gaaatcaagaccactcaccatcatcagaacgcagcactccca 706
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gaaatcaagaccactcaccatcatcagaacgcagcactccca 906
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space: 764609
Effective search space used: 764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no541_c10.g1 MSMg01no541_c10.g1 CHROMAT_FILE:
MSMg01no541_c10.g1 PHD_FILE: MSMg01no541_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:41 2005
(668 letters)
>mm_chr3_143779770_143780843
Length = 1074
Score = 1214 bits (628), Expect = 0.0
Identities = 661/674 (98%), Gaps = 6/674 (0%)
Strand = Plus / Minus
Query: 1 tctactaac-t-ggcatcccacttatactagagcagcaaagggccacaggactccctctg 58
||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 tctactaacatcggcattccacttatactagagcagcaaagggccacaggactccctctg 815
Query: 59 aagtgct----gaccgaccgaccgaccgtgcggtgtgtaggcagcttccctggggttcca 114
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 aagtgctgaccgaccgaccgaccgaccgtgcggtgtgtaggcagcttccctggggttccg 755
Query: 115 aagctttcctctgaggtcaacaacttttcttgtctctctttttggctaaacttctcacag 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 aagctttcctctgaggtcaacaacttttcttgtctctctttttggctaaacttctcacag 695
Query: 175 aggtcagggctaagctgaagagtttgtagaatccgagcctaaacatttcgtaagcagttc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 aggtcagggctaagctgaagagtttgtagaatccgagcctaaacatttcgtaagcagttc 635
Query: 235 aggaacacagcaagtacacgaggggctttacccagaacaggtaggaaaagcaaaagcacc 294
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 634 aggaacacagcaagtacacgaggggctttacccagaacaggtaggaaaagcaaaagcaac 575
Query: 295 atttccacgctgagggatttagtgggaagatctaacccaacaagcaggaactcttttcag 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 atttccacgctgagggatttagtgggaagatctaacccaacaagcaggaactcttttcag 515
Query: 355 gttcagtcaagttcatgtctagcacattcttcatggatgcccaacaggcacatgctttgt 414
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 514 gttcagtcaagttcatgtctagcacattcttcatggatgcccaacaggcacaggctttgt 455
Query: 415 caatgggaattgttttcaatctcattaatgttttgtttggcaaaaatcacatctttgaat 474
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 caatgggaatttttttcaatctcattaatgttttgtttggcaaaaatcacatctttgaat 395
Query: 475 actttcctattaatcatctatggcttttcattctgccagagttatcactggtgttcagtt 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 actttcctattaatcatctatggcttttcattctgccagagttatcactggtgttcagtt 335
Query: 535 actgcatagataggaaggagccagacttcagcctgtactcagttttaacctatttttttg 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 actgcatagataggaaggagccagacttcagcctgtactcagttttaacctatttttttg 275
Query: 595 aagtgtattttgaaaaagagtgagactcccttcacaaccaaatttcgtatctgtgatact 654
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aagtgtattttgagaaacagtgagactcccttcacaaccaaatttcgtatctgtgatact 215
Query: 655 acagagggtgaaaa 668
||||||||||||||
Sbjct: 214 acagagggtgaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1074
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1064
Effective search space: 700112
Effective search space used: 700112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
