NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATGCTTTCTCGTCAGGGAGAGTAGTTTTTAACCAACATTTGCCT
AAACTACTCTAGGTGCTATGATCTTTTCTAATGCTATTGTTCATGAGCAT
CCATCCCTTAACACACTTACTGATCAAAATGGAACACAATACTGTGGTTA
TAGCTACATCTGCAATGCCATTATCACCCTTGACAGGTTAAAAAAAATCA
TAATACTGATGGTGACGAATTTGCTCAGACTTGTGTAGGATGGGTCACTA
ACAAGTTGTACAGAAATGCAATGTTTGTCAGTTAGCCATGCCTTGCACAT
AACTGAAAACTTGGGCAGAACACTCAGTTTCTATTAGAAAAAAATGCCTT
TAGTGAACTGAAATGAGAGTATATTTTATAAAGATGGGATATTTTATAAA
TGAAAGAGAAGTGTAGCATTTGGTTCGGCAGGCAAGCATTTTTATAGTAA
GGAAAGCATTATATTTGTTCATCTACTTTTGGTTCCAGAATTGTCATAAC
ACAAAACAGTGAGATGTCTTCAGACATGTGCAGTCTTTGTCTCGTAGAGT
ATGACTTCTTATAACTTCTGTGAGAATATGTGACACTCACCTACTTGTCT
GCTTTGAGTTGGGAATGATAATATCGNAGAAGTCTTTCTTAGATCCCATC
CTGNCTTCCCTTCTCTTCTGTGATAAAATGCTTCCACAGAGCACTTTTAA
GAGAAGACAGTTATTTGACTTACATTCA

CCCTTATTTTTTTTNTNNNNNNNTTTGTTNTTTTTCCTATGAXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXAATTCTGTCTTAGNTCAATGGGTGTGGTTCCTTTNATTGA
TCCTGCTGGGTTAGACATCACCCCATTCTGCATCTATGGTGAGCTTTGGT
AATAAATCTTCCTGGGGTAAGATTAATAACATTTTTTTGGTAAAAAAAAA
TTTTTATTTTTGTGAAAGAAAAAATAAAAAATGTTTAATTTTACCTAAAA
ATTTTTTCCGCCCTTTAAATTTCCCCTTTTTTGGGGGGGAATATTTTAAA
AAATTTTTTGAGGGTGTTTTTTTTTTTGGGGGGGGCCTTAAACAACAAAA
AAAAAATGGCCCCCCCCCTGGGGGGGGAAAAAAAAATATTTTTTTTTGGG
GGGCCCCCCCCCCCTTTTGGGGGGTGGGGAAAAAATATTTTTTTTTTTCT
TTTTTTTTTGGGGGGGAGAAAAAAAAAAAAAATATTCTTTCTTTTCTTTC
CCNNCTTCTAGNANAAAAATAAAATAACAAATCTCTCCCCCCCCCCGCCC
GCGNNCCGGCCGCGCCGCCCCCCCCCCGCGGCGGGCGATTATTTTTTTTT
ATTATTTCTTATCCNTNNNTCTCCTCTTCCTCCCCCCCTCATNNTTTTGT
GTTTTGTTGTTTTTTNCCGCCCTCCCCCNCCTCGGGGGAGGGAAGATGTA
ATTTTTTTTA

Query= MSMg01no541_g22.b1 MSMg01no541_g22.b1 CHROMAT_FILE:
MSMg01no541_g22.b1 PHD_FILE: MSMg01no541_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:04 2005
         (612 letters)



>mm_chr3_144783616_144784627
          Length = 1012

 Score = 1170 bits (605), Expect = 0.0
 Identities = 608/609 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctatgctttctcgtcagggagagtagtttttaaccaacatttgcctaaactact 63
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 204 ggaattctatgctttctcgtcagggagagtagtttttaaccaacatttgcctaaactagt 263

                                                                       
Query: 64  ctaggtgctatgatcttttctaatgctattgttcatgagcatccatcccttaacacactt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctaggtgctatgatcttttctaatgctattgttcatgagcatccatcccttaacacactt 323

                                                                       
Query: 124 actgatcaaaatggaacacaatactgtggttatagctacatctgcaatgccattatcacc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actgatcaaaatggaacacaatactgtggttatagctacatctgcaatgccattatcacc 383

                                                                       
Query: 184 cttgacaggttaaaaaaaatcataatactgatggtgacgaatttgctcagacttgtgtag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttgacaggttaaaaaaaatcataatactgatggtgacgaatttgctcagacttgtgtag 443

                                                                       
Query: 244 gatgggtcactaacaagttgtacagaaatgcaatgtttgtcagttagccatgccttgcac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gatgggtcactaacaagttgtacagaaatgcaatgtttgtcagttagccatgccttgcac 503

                                                                       
Query: 304 ataactgaaaacttgggcagaacactcagtttctattagaaaaaaatgcctttagtgaac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ataactgaaaacttgggcagaacactcagtttctattagaaaaaaatgcctttagtgaac 563

                                                                       
Query: 364 tgaaatgagagtatattttataaagatgggatattttataaatgaaagagaagtgtagca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgaaatgagagtatattttataaagatgggatattttataaatgaaagagaagtgtagca 623

                                                                       
Query: 424 tttggttcggcaggcaagcatttttatagtaaggaaagcattatatttgttcatctactt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tttggttcggcaggcaagcatttttatagtaaggaaagcattatatttgttcatctactt 683

                                                                       
Query: 484 ttggttccagaattgtcataacacaaaacagtgagatgtcttcagacatgtgcagtcttt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttggttccagaattgtcataacacaaaacagtgagatgtcttcagacatgtgcagtcttt 743

                                                                       
Query: 544 gtctcgtagagtatgacttcttataacttctgtgagaatatgtgacactcacctacttgt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtctcgtagagtatgacttcttataacttctgtgagaatatgtgacactcacctacttgt 803

                    
Query: 604 ctgctttga 612
           |||||||||
Sbjct: 804 ctgctttga 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)