BAC Information

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BAC

Clone NameMSMg01-541I04
Chromosome3 (Build37)
Map Location 158,059,441 - 158,060,062
singlet/doubletsinglet
Overlap geneLrrc7
Upstream geneLOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40
Downstream geneLOC100041008, LOC668905
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541I04.T7 (MSMg01no541_i04.b1)MSMg01-541I04.TJ (MSMg01no541_i04.g1)
ACCAG607508AG607509
length755750
length of high quality
(start - end)
592 (51 - 642)622 (82 - 703)
definitionCHROMAT_FILE: MSMg01no541_i04.b1 PHD_FILE: MSMg01no541_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:12 2005CHROMAT_FILE: MSMg01no541_i04.g1 PHD_FILE: MSMg01no541_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGGAAATTCTTAAGCAAATGGATGGATCTGGAGGATATCA
TCCTGAGTGAGGTAACCCAAATACAAAAGAACACACATGATAAACACTCA
CTGATAAGTAGATATTAATCAAGAAACTTAAAATACCTGAGATACAATTT
GCAAAACACATGAAACTCAAGAAGAAGGAAGACCAAAGTGTGGATACTTC
GTTCCTTCTTAGAATGGGGAACAAAATACCCATGGAAGGAGTTACAGAGA
CAAAGTTTAGAGCTAAGACGGAAGGAAGGACCATCCAGGGACTGCTGCCC
CACTCAGGGATCCATCCCATAAACAACCACCAAACCCAGACACTATTGCA
TATACCAACAAGATTTTGCTGACAAGACCTTGATAGCTGCCTCCTGTGAG
GCTATGCCAGTGCCTGGCAAATACAAAAGTAGATGCTTACAGTCATCTAT
TGGATGGAACACAGGGTCCCCAATGAAGGAGCTAGAGAAATACCCAAGGA
ACTGAAGGAGTCTGCAGCCCTGTAGGAGGAATAACAATATGTACTAACCA
GTACCCCCAGAGCTCATGTCTCTAGCTGCATATGTAGCAGAGGATGGCCT
AGTAGACCATCAATGGGAGGAGAGGCCCTTGATCTTTTGAAGATTCTATG
CCCCAGTATAAGGGAAGGGCCAGGAAGTGTGAGTGTGTGTGTTGTGGTGC
AGCCC
NCCCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCCCCATGGTAAGGGG
CTGGGTAAGGGGCTTTGCAGAGTGTGTGCTTCTTAGGGCAGAAGCTCTTA
GAGATGGAATCAGTGCCCCTACAAAATGGGTTCAGGAACTCCCAGTCTCT
TCCCTTCAAAAAGGGAAGACAATTCCTAACTGGACATGTTAATTGATGAC
ACCTTTACCTCAGAGTTTCCAAGCTCCAGAATTATGTTAATGAACTTTGA
TTATTAGGTATGTCCCAATATTGATTTGTAATGAGTAGAGGGGGATCTCT
AAGCACAACAAAAGCTGAGTAATAAGAAGATTTGAAGGTTTAATTTCTAA
GTACCTTTTCTAATAATTTGTGGAAATTACCTAGTAAAACATCAAGGAGG
AGTTAGATGTGTGGATCATATTCAAAAGTCTCTGGCCATATCCCACTGCT
CTCTTGATACTTAATTTTTGTTAATAGGCTAAGGATTATCTCTCTTTAAA
TAAACAAATATGTCAGTGTGTGTGCTTATGTTCACACAGTACTATAGATG
ACAGAAGAGTACATGGGATGTTCCATTACTCAAGTTATAGATGATTGTGA
GATGCTGTGTAGGTGCTGAAAACTGAACCTGGGGTATTTAAGAACATCAA
ATGCCCTTCCCTAGTGAGACATCTCTCTAGCCCCTTTTGACATTTCTTAT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_i04.g1 MSMg01no541_i04.g1 CHROMAT_FILE:
MSMg01no541_i04.g1 PHD_FILE: MSMg01no541_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:12 2005
         (622 letters)



>mm_chr3_158059241_158060262
          Length = 1022

 Score = 1156 bits (598), Expect = 0.0
 Identities = 616/622 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagccccatggtaaggggctgggtaaggggctttgcagagtgtgtgcttcttagggcag 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tcagccccatggtaaggggctgggtaagaggctttgcagagtgtgtgcttcttagggcag 260

                                                                       
Query: 61  aagctcttagagatggaatcagtgcccctacaaaatgggttcaggaactcccagtctctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 261 aagctcttagagatggaatcagtgcccctacaaaatgggttcaggaactcccagtttttt 320

                                                                       
Query: 121 cccttcaaaaagggaagacaattcctaactggacatgttaattgatgacacctttacctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccttcaaaaagggaagacaattcctaactggacatgttaattgatgacacctttacctc 380

                                                                       
Query: 181 agagtttccaagctccagaattatgttaatgaactttgattattaggtatgtcccaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 agagtttccaagctccagaattatgttaatgaactttgattattaggtatgtcccaacat 440

                                                                       
Query: 241 tgatttgtaatgagtagagggggatctctaagcacaacaaaagctgagtaataagaagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatttgtaatgagtagagggggatctctaagcacaacaaaagctgagtaataagaagat 500

                                                                       
Query: 301 ttgaaggtttaatttctaagtaccttttctaataatttgtggaaattacctagtaaaaca 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 ttgaaggtttaatttctaagtaccttttctaataatttgtagaaattacctagtaaaaca 560

                                                                       
Query: 361 tcaaggaggagttagatgtgtggatcatattcaaaagtctctggccatatcccactgctc 420
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 tcaaggaggagttagatgtgtggatcacattcaaaagtctctggccatatcccactgctc 620

                                                                       
Query: 421 tcttgatacttaatttttgttaataggctaaggattatctctctttaaataaacaaatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcttgatacttaatttttgttaataggctaaggattatctctctttaaataaacaaatat 680

                                                                       
Query: 481 gtcagtgtgtgtgcttatgttcacacagtactatagatgacagaagagtacatgggatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcagtgtgtgtgcttatgttcacacagtactatagatgacagaagagtacatgggatgt 740

                                                                       
Query: 541 tccattactcaagttatagatgattgtgagatgctgtgtaggtgctgaaaactgaacctg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccattactcaagttatagatgattgtgagatgctgtgtaggtgctgaaaactgaacctg 800

                                 
Query: 601 gggtatttaagaacatcaaatg 622
           ||||||||||||||||||||||
Sbjct: 801 gggtatttaagaacatcaaatg 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)