BAC Information

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BAC

Clone NameMSMg01-541K14
Chromosome3 (Build37)
Map Location 49,339,588 - 49,339,779
singlet/doubletsinglet
Overlap genenone
Upstream gene1700018B24Rik, LOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579
Downstream geneLOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469, Slc7a11, EG621304
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541K14.T7 (MSMg01no541_k14.b1)MSMg01-541K14.TJ (MSMg01no541_k14.g1)
ACCAG607624AG607625
length758760
length of high quality
(start - end)		195 (50 - 244)678 (78 - 755)
definitionCHROMAT_FILE: MSMg01no541_k14.b1 PHD_FILE: MSMg01no541_k14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:24 2005CHROMAT_FILE: MSMg01no541_k14.g1 PHD_FILE: MSMg01no541_k14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTACCAACCTTAGAGGTCAATCTGAGATCTTAACTCCTCATA
ATATAATGTACAAGACGTTGGACATGTTTTTAGTCTTTAAAATGTTTCAT
TTAATTAAGTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATT
TATTTATTTATTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGNGNGNGNGN
GNGNGNGNGCNCNNNNGNNNCGGNGGGNCGNGGGGCGCCGGGGNGGNGGG
GGGGGNGGGGGGGCGCCCNGNCCGNCGGGGGGNGCCGGGGGCCCGGGNCG
CGGCGCGGGCCGGCCNCCCCCGGCCCCGGGCCCCNCCCCGCGGGCCGGGC
CNCGNGGGGNGGGGGGCCCCCCCCCGGCCCGCGCGGGGCCCCGGNGGCCC
CCGCGCGGCCCCCGGGCCCCCGCGCCCCCCGNCGCGGGGCCCCCCCCGGC
GCNNCCCCCGCCGCGCCGGGCCCGCGCCGCCCCCCCCCCCTTTCCCCCCG
GTTTTCTCCCGCTTTTCTTCCCTCTTTGTTTGCCTTCCGCCCCCCCCTCT
GTCTCTTTCCTCCCTCCCCCCCCGCTCTTTTTGTCTTGTTCTTTCCCCTC
TTCTTTCGGGTTCTCTCGCCCTTTTCCCTTTTTCTTCCCCCCTTCTCGCC
TGTTGCTTTTTCTCGCGTCCTTTTCTCCTTGCTCCCCCTGCCGTTCTTTC
CGTTTGCT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATTTAATTCTTTACCACATTTT
TAAATTGGGTTATTTGGTTTATTGGGGTTTAACTTTTTGAGTTCTTTATA
TATATATTGGATATTAGCCCTCTGTTGGATATAGGGTTAATGAAGATCTT
TTCCTAGTTTGTAGGCTGCCATTTTATCTTAGTGTTTGTACCCTTTGCCT
TACAGAAGCTTTTCAGTTTCATGAGGTACCATTTATCAATTGTGGATCTT
AGAGCCTGAGCCATTGGTGTTCTGTTCAGGGAATTTTCTCATGATTCAAT
GTGTTTTAGACTGTTTCCTACTTTCTCTTCTATTTGATTCAGTCTATCCA
CTTTTATGTTGAGGTTCTTGATCCACTTGGACTTGAGCTTTGTGCAGGGT
GATAAATATCGATCAGTTTGCATTCCTTTGCATGAAGACTGCCAGCTCAA
ACAGTACCATTTGTTGAAAATGCACTGTTTTTCCACTGGATGGTTTTGGC
TTCTTGGTCAAATATCAATGTCCATAGGTATGTAGGCTTATTTCTGGGTT
GTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTCTTTCTTTCTTTCTTTCTTTCTCCCTC
TCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCTTTCTTTCTT
TCTTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_k14.b1 MSMg01no541_k14.b1 CHROMAT_FILE:
MSMg01no541_k14.b1 PHD_FILE: MSMg01no541_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:24 2005
         (195 letters)



>mm_chr3_49339384_49339978
          Length = 595

 Score =  352 bits (182), Expect = e-102
 Identities = 188/192 (97%), Gaps = 4/192 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaccaaccttagaggtcaatctgagatcttaactcctcataatataatgtacaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaccaaccttagaggtcaatctgagatcttaactcctcataatataatgtacaa 264

                                                                       
Query: 65  gacgttggacatgtttttagtctttaaaatgtttcatttaattaagttatttatttattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gacgttggacatgtttttagtctttaaaatgtttcatttaattaagttatttatttattt 324

                                                                       
Query: 125 atttatttatttatttatttatttatttatttatttatt----gagtgtgtgtgtgtgtg 180
           |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||
Sbjct: 325 atttatttatttatttatttatttatttatttatttatttattgagtgtgtgtgtgtgtg 384

                       
Query: 181 tgtgtgtgtgtg 192
           ||||||||||||
Sbjct: 385 tgtgtgtgtgtg 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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