NNNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTTACACGAAAAATTCTGGCTACAATAATTGAGGGCAAA
ATATAGCTAAGATTCTCAACAGGTCCCTGGAAATGGTTCTGCCTCTCAGC
AGCAATTGAGCTAGTGCTTCTTCCATGGGAGATGATTAAGTGCTTTCAAG
AAAAGCTCTCCATTTGGACACAATTTTTCATTGATATGAAGAATCTTTTA
CTCATCTCTGCTCTTACTCAATAAGGCATACTAATCAGAGGACTTGGACT
TTCCAATTTAACTGTCCAAAATTCAACTTGACTAACAGAGGGAAAAGTGC
CACTTGATATTCTGTCTGCAAATAATGGTAAAAAGCAACCAATGGACTGG
ATGTGATCATTTCAGCTTAAATCACTCTTCATACAAATTGACTTTTCATC
AGATTAGTAGCATGCAAGAAGGCAGAGTCTAGGACCCCTAAACAAAGCAA
ACAAATGAATTAGTGACTTGGAAATACTCTCTTACCATAATCATCTTAGG
TTGCATGTTTGTTTGATAACCAAGCAAAGTTGATTGGTTCATGGAGTATA
GTATGCATTTGATTAATGTCTATAAAAAGTTTAGTACAAGGGTCCATTGT
GCCAGCTGGGCTTTTGTGAAATCATCCAACACTGTTGATTTAGCAGCCTG
TTAACATCATTGCTCATTGAAATACTTTCTAACCAATAATTAAAAATTAT
NAAATTA

NNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGGACCCCAT
TTTTAATAGGGTTATTTGTAACTCTGGAGTCTAACTTCTTGAGTTCTTTG
CATATATTGGATAGTAGCCTGCTCTCAGATTTAGAATTGGTAAAGATCTT
TTCCCAATTTGTTGGTTGTGTTTTTGTCTTATTGACAGTGTCCTTTGCCT
TACAGAGCTTTGCAATTTAATGAGGTCCCCTTTGTAGATTCTTGATCTTA
AAGCATAGGCCATTGGTGTTCGGTTCAGGAATTTTTGCCCTGTGGCATAT
CTTTGAGGCTCTTCCCCACTTTCTTCTCTATAAGTTTCAATGTTTCTGGT
TTTATGTGGAGGTCCTTGATCCACTTAGACTTTAGCTTTTTACAATAAGA
TAAGAATGAATCAATTCGCATTCTTCTACATGCTAACTGCCAGTTGAGCC
ACCACCATTTGTTGGAAATGCTGTCCTTTTCCCACTGGATGACTTTAGCT
CCTTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGTTTC
TTCAATTCTATTCCATTGTTCTACCTGTCTGTTGCTGTACCAGTACCATG
CAGTTTTTATCACAATTGCTCTGTAGTACAGCTTGAGGTCAGGGATGGTG
ATTTCACCAGAGGTTATCATATTGTTGAGAAGAGTTTTTGCTATCCTAGG
TTTTTAGT

Query= MSMg01no541_p11.b1 MSMg01no541_p11.b1 CHROMAT_FILE:
MSMg01no541_p11.b1 PHD_FILE: MSMg01no541_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:50 2005
         (698 letters)



>mm_chr3_24291991_24293088
          Length = 1098

 Score = 1295 bits (670), Expect = 0.0
 Identities = 688/694 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttacacgaaaaattctggctacaataattgagggcaaaatatagctaagatt 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 gaattcttttacacaaaaaattctggctacaataattgagggcaaaatatagctaagatt 839

                                                                       
Query: 65  ctcaacaggtccctggaaatggttctgcctctcagcagcaattgagctagtgcttcttcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 ctcaacaggtccctggaaatggttctgcctctcagcagcaattgagctagtgcttcttcc 779

                                                                       
Query: 125 atgggagatgattaagtgctttcaagaaaagctctccatttggacacaatttttcattga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 atgggagatgattaagtgctttcaagaaaagctctccatttggacacaatttttcattga 719

                                                                       
Query: 185 tatgaagaatcttttactcatctctgctcttactcaataaggcatactaatcagaggact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tatgaagaatcttttactcatctctgctcttactcaataaggcatactaatcagaggact 659

                                                                       
Query: 245 tggactttccaatttaactgtccaaaattcaacttgactaacagagggaaaagtgccact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tggactttccaatttaactgtccaaaattcaacttgactaacagagggaaaagtgccact 599

                                                                       
Query: 305 tgatattctgtctgcaaataatggtaaaaagcaaccaatggactggatgtgatcatttca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 598 tgatattctgtctgcaaataatggtaaaaagcaaccaatggactggatgtggtcatttca 539

                                                                       
Query: 365 gcttaaatcactcttcatacaaattgacttttcatcagattagtagcatgcaagaaggca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gcttaaatcactcttcatacaaattgacttttcatcagattagtagcatgcaagaaggca 479

                                                                       
Query: 425 gagtctaggacccctaaacaaagcaaacaaatgaattagtgacttggaaatactctctta 484
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 478 gagtctaggacccctaaacaaagcaaacaaatgaattcgtgacttggaaatactctctta 419

                                                                       
Query: 485 ccataatcatcttaggttgcatgtttgtttgataaccaagcaaagttgattggttcatgg 544
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ccataatcatcttaggtttcatgtttgtttgataaccaagcaaagttgattggttcatgg 359

                                                                       
Query: 545 agtatagtatgcatttgattaatgtctataaaaagtttagtacaagggtccattgtgcca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 agtatagtatgcatttgattaatgtctataaaaagtttagtacaagggtccattgtgcca 299

                                                                       
Query: 605 gctgggcttttgtgaaatcatccaacactgttgatttagcagcctgttaacatcattgct 664
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 298 gctgggcttttgtgaaatcatccaacactgctgatttagcagcctgttaacatcattgct 239

                                             
Query: 665 cattgaaatactttctaaccaataattaaaaatt 698
           ||||||||||||||||||| ||||||||||||||
Sbjct: 238 cattgaaatactttctaacaaataattaaaaatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space:   748544
Effective search space used:   748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)