Query= MSMg01no542_f15.b1 MSMg01no542_f15.b1 CHROMAT_FILE:
MSMg01no542_f15.b1 PHD_FILE: MSMg01no542_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:21 2005
(684 letters)
>mm_chr3_128915731_128916817
Length = 1087
Score = 1276 bits (660), Expect = 0.0
Identities = 677/684 (98%), Gaps = 3/684 (0%)
Strand = Plus / Minus
Query: 4 ggaattctgctcctgtccagtcaaaggctattcggcttttggttaggactataaggtggg 63
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 887 ggaattctgctcctgcccagccaaaggctattcggcttttggttaggactataaggtggg 828
Query: 64 ggagaggagacttggaatcagagggttagggtaaagaagcaagaaagtctaagactgaga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 ggagaggagacttggaatcagagggttagggtaaagaagcaagaaagtctaagactgaga 768
Query: 124 ggtataggtttagccagcaagcaccccctctcttccttttgtgtctcactacatccattt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ggtataggtttagccagcaagcaccccctctcttccttttgtgtctcactacatccattt 708
Query: 184 ctagaccag---cccccccccccaacttccacaccccaggtcaggacagaaaggcgatgt 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ctagaccagccccccccccccccaacttccacaccccaggtcaggacagaaaggcgatgt 648
Query: 241 gctacctaaagctaaagttaaaaacatcagcaaatcacctttctcatcttaattccgccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gctacctaaagctaaagttaaaaacatcagcaaatcacctttctcatcttaattccgccc 588
Query: 301 tccctcccattcgcctgtcaggtgaatgtcgcgctaatctgaggaagctttactttaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tccctcccattcgcctgtcaggtgaatgtcgcgctaatctgaggaagctttactttaatt 528
Query: 361 gcaaagaagacagagtcttgaaaaggcaggctaataaattagaaatcgagaagaaaatgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gcaaagaagacagagtcttgaaaaggcaggctaataaattagaaatcgagaagaaaatgg 468
Query: 421 acccgtcaaaagaaaattaccttgactttagtcgaacaactgcatggtggttcactctgg 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 467 acccgtcaaaagaaaattaccttgactttagtcgaacaactgcttggtggttcactctgg 408
Query: 481 atttatacatgaataaaaaaagtcgcctcacatcacgtcctctgtaatgcttattagtcc 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 atttatacatgaataaaataagtcgcctcacatcacgtcctctgtaatgcttattagtcc 348
Query: 541 ccagacagaaaactcacaatagagtagaaaccctaacccagcgttttcaaaatgccgaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ccagacagaaaactcacaatagagtagaaaccctaacccagcgttttcaaaatgccgaaa 288
Query: 601 gcttatccattctacttaacgttgattaagacacaacctacgtctttcaaattccttgca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gcttatccattctacttaacgttgattaagacacaacctacgtctttcaaattccttgca 228
Query: 661 cactgtattaagctcgtcctagcc 684
||||||||||||||||||||||||
Sbjct: 227 cactgtattaagctcgtcctagcc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1087
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1077
Effective search space: 725898
Effective search space used: 725898
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_f15.g1 MSMg01no542_f15.g1 CHROMAT_FILE:
MSMg01no542_f15.g1 PHD_FILE: MSMg01no542_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:21 2005
(651 letters)
>mm_chr14_119133850_119134901
Length = 1052
Score = 136 bits (70), Expect = 7e-36
Identities = 120/138 (86%), Gaps = 9/138 (6%)
Strand = Plus / Plus
Query: 2 aggataggcagggctacaa-agagagacactg--tgtcaccacctctccc-aaaattaat 57
||||||| |||||||| || ||||||||| | | || || |||||||| |||||||||
Sbjct: 202 aggatagacagggcta-aagagagagaca--gcatatcccctcctctccccaaaattaat 258
Query: 58 taattagttaatgttatctcaaatgaactctgtgaaattccacaagttaaaataaaggtt 117
|||||||||||||||||||||||| || ||||||||| ||||||| ||||||||||||||
Sbjct: 259 taattagttaatgttatctcaaataaattctgtgaaactccacaaattaaaataaaggtt 318
Query: 118 atcagtacttt-cccctt 134
|||| | |||| ||||||
Sbjct: 319 atcact-cttttcccctt 335
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1052
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1042
Effective search space: 667922
Effective search space used: 667922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
