NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTGCAAAATGAGAGATCAAGATCAGATAACTGAACTTACAAAG
AAGCACATGTGTCAGTTGAGAGGTTTTCCTCTGGCTCCTCACATGGACTC
CTATAACGATTTTGAAGATGATATAATAAATATAATAAGTCACATACAGT
AGGATCTCACTGTAAGGTGATCTAATGATGTTTCTAACTTTGTCATGGTT
GCTTTGAGAGGAAAACTTTAGAGTGTATCTGCTCCAGTAAGTGGTTGCCT
TTTATAAAATGGTAAAAGGCTCAATATGCCTGAAGATGAGTATAGCAATG
TATCATGTGGTGGAGGAGCCATCATTGCCCCACAGTGACATTCCAGATGG
TAGAGGGGCCATCAGAACCTCACAGTGAGATGAGCCTTCACTAGCAATTA
CTTCCAAGGCTCAAGTGACATCTGTGTATGAGAACAACTTATGAGTTTTC
AGCCTTCTTGCATTTGATCCTTATGGTCTGGAAAGATCTACAGAGCAGAT
TTCATCAACTCCTGTTACAGATGTGGAAACAGAGACTCAGTAACATAAAC
CAAGGGCCTAATGTCACAGTGACAGGCAGCAGAGCCAGGGTTAGACACCA
ACCCTTCCATTTATAAACTAAGACTTCCATAGCTACTGTTTCTCATGCGC
CTAGAATTTCATAAGTTAGTTTAAAATGACATANGAAAAAGTGACACTCT
TATTACATATATAGGGGATATCATACATA

NCCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGCATTGCTGTTGGAGCAG
ATTAATTATTCAATAGCCATCCTAGGAAAAAACTTAGAAATGTCGATTGT
TGGCAATGACCACTGCCCTTTAAAAGCATTTGGAAAAATAAAAATGTTAG
TGAAGTTAGGTTGTGTTTTTGCTACTGGCTCTGTTATAGATAATCTTAGA
GAAAAATTCAAAGTTCAGAAAATCACATTCTTAATAGTTAAGCTAGGGAC
TTTTTATGGTCAGGGAACAAAAACAGTGGCATCACTAACTGACAAGACTC
TCACTGAGGCTGGACTGGAGTTAGTTGATTTCTTTATATCCATTTTTGCC
CTAGCTTCCTGATATGATTTAATAAGAGTTGCTGATTAGTAGATATGCAT
TCTAAGGATTTAAAATAGATATGACTGATTTTTATGTAAAAGTTTAGATT
TGTGATTTTTTTTAAAGATCCTCATAAGATTACTTTTAAAGATAAATGGT
AAAATGATTAATTCTTTCTTTGTAACTGTAAATTGCTGCCTGCCAGTAAG
AGACTGTCTAAGAAAACTACCCTGCTTGCTCTCACTTTGCTAAGCACTAA
CAAGTTGCTAAATTACCAATATATATTGGTTCTTGGGAATCATTTGTTTT
CTTTACACGTAACATGTAATGTGATGTCTTAAAACGGTGTTGAGGAACAT
ACTGTTTTTTCATAGTT

Query= MSMg01no542_l14.b1 MSMg01no542_l14.b1 CHROMAT_FILE:
MSMg01no542_l14.b1 PHD_FILE: MSMg01no542_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:51 2005
         (614 letters)



>mm_chr3_39366193_39367206
          Length = 1014

 Score = 1156 bits (598), Expect = 0.0
 Identities = 607/610 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttgcaaaatgagagatcaagatcagataactgaacttacaaagaagcacatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gaattcatttgcaaaatgagagatcaagatcagataactgaacttacaaagaagcacatg 597

                                                                       
Query: 65  tgtcagttgagaggttttcctctggctcctcacatggactcctataacgattttgaagat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tgtcagttgagaggttttcctctggctcctcacatggactcctataacgattttgaagat 537

                                                                       
Query: 125 gatataataaatataataagtcacatacagtaggatctcactgtaaggtgatctaatgat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gatataataaatataataagtcacatacagtaggatctcactgtaaggtgatctaatgat 477

                                                                       
Query: 185 gtttctaactttgtcatggttgctttgagaggaaaactttagagtgtatctgctccagta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gtttctaactttgtcatggttgctttgagaggaaaactttagagtgtatctgctccagta 417

                                                                       
Query: 245 agtggttgccttttataaaatggtaaaaggctcaatatgcctgaagatgagtatagcaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 agtggttgccttttataaaatggtaaaaggctcaatatgcctgaagatgagtatagcaat 357

                                                                       
Query: 305 gtatcatgtggtggaggagccatcattgccccacagtgacattccagatggtagaggggc 364
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gtatcatgtggtggaggagccgtcattgccccacagtgacattccagatggtagaggggc 297

                                                                       
Query: 365 catcagaacctcacagtgagatgagccttcactagcaattacttccaaggctcaagtgac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 catcagaacctcacagtgagatgagccttcactagcaattacttccaaggctcaagtgac 237

                                                                       
Query: 425 atctgtgtatgagaacaacttatgagttttcagccttcttgcatttgatccttatggtct 484
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 atctgtgtatgagaacatcttatgagttttcagccttcttgcatttgatccttatggtct 177

                                                                       
Query: 485 ggaaagatctacagagcagatttcatcaactcctgttacagatgtggaaacagagactca 544
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 176 ggaaagatctacagagcagatttcatcaactcatgttacagatgtggaaacagagactca 117

                                                                       
Query: 545 gtaacataaaccaagggcctaatgtcacagtgacaggcagcagagccagggttagacacc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 gtaacataaaccaagggcctaatgtcacagtgacaggcagcagagccagggttagacacc 57

                     
Query: 605 aacccttcca 614
           ||||||||||
Sbjct: 56  aacccttcca 47


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)