Query= MSMg01no543_c08.b1 MSMg01no543_c08.b1 CHROMAT_FILE:
MSMg01no543_c08.b1 PHD_FILE: MSMg01no543_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:25 2005
(660 letters)
>mm_chr3_150478421_150479480
Length = 1060
Score = 1236 bits (639), Expect = 0.0
Identities = 654/659 (99%)
Strand = Plus / Minus
Query: 1 tttcaaatttcctttaccacaaaataatcttaattatgtttggggatggtaagtatgcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 tttcaaatttcctttaccacaaaataatcttaattatgtttggggatggtaagtatgcat 800
Query: 61 tcttgctttataaagatataagcaaccttgcttttaatttgctattatgattaactacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 799 tcttgctttataaagatataagcaaccttgcttttaatttgctattatgattaactatct 740
Query: 121 agtttaaccagaacctttctagttttattgaaatgagactagaattcaacaatttgccta 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 739 agtttaaccagaacctttctagttttattgaaatgagactagaattcaacattttgccta 680
Query: 181 tgtaagataagtatattcttaagcattttccagttaatttacaataatgggaaatgtttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgtaagataagtatattcttaagcattttccagttaatttacaataatgggaaatgtttg 620
Query: 241 aaaaagtgcagagtactacttaagtattttcaacagtataaaatacagattaggaaattg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaaaagtgcagagtactacttaagtattttcaacagtataaaatacagattaggaaattg 560
Query: 301 cctttgaagtgtcttgtaatggtggaattagttcaggaagagtactctgctattagctgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cctttgaagtgtcttgtaatggtggaattagttcaggaagagtactctgctattagctgc 500
Query: 361 aatggtttttaacctcaatagtctgttactctaataaaaggctatgtaggtcaacattac 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 499 aatggtttttaacctcaatagtctgttactctaataaagggctatgtaggtcaacattac 440
Query: 421 aaatgcatttaaagaacaagtttcacaaatatataactaatgccagtggtgttaaagtct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaatgcatttaaagaacaagtttcacaaatatataactaatgccagtggtgttaaagtct 380
Query: 481 gctgcatatttgaatttccttggcctgggcacaataatgagaccctgctattctctcagt 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 379 gctgcatatttgaatttccttggcctgggcacaataatgagaccctgttattctctcagt 320
Query: 541 cttgagtattgagaggtccattggtaattctaacaacagtgtctcctgtcaacatgctta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cttgagtattgagaggtccattggtaattctaacaacagtgtctcctgtcaacatgctta 260
Query: 601 aggaattcatgttccattatctacagacagggaagagaggaactttgagattactagac 659
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 259 aggaattcatgttccattatctacagacagggaagagaggaactttgagatgactagac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_c08.g1 MSMg01no543_c08.g1 CHROMAT_FILE:
MSMg01no543_c08.g1 PHD_FILE: MSMg01no543_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:25 2005
(641 letters)
>mm_chr3_150399538_150400578
Length = 1041
Score = 1023 bits (529), Expect = 0.0
Identities = 609/637 (95%), Gaps = 7/637 (1%)
Strand = Plus / Plus
Query: 1 tcagtaagcacaaacccatgtaaactggtttcttgggctgcactgacttacaagcctatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagtaagcacaaacccatgtaaactggtttcttgggctgcactgacttacaagcctatg 260
Query: 61 atctacctgtgataaggaacagctgagtgggtcatttgctgataaacatatttccaggga 120
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 atctacctgtgatgaggaacagctgagtgggtcattggctgataaacatatttccaggga 320
Query: 121 ttttccttttcattatctattgaaattctcataacaggttgttcttacaaagtcaagtcc 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttccttttcattatctactgaaattctcataacaggttgttcttacaaagtcaagtcc 380
Query: 181 tgagttggaacattttttcccaaaaaagtatatttctggtgatataacgcatcttatgca 240
||||||||| || |||| ||| |||| ||||||||| |||||||||| ||||||||| |
Sbjct: 381 tgagttggagca-ttttccccccaaaattatatttcttgtgatataactcatcttatgta 439
Query: 241 tcttagctcttgaaagccctgggtca-gccccccccccaacaacaacaacaacaacaaaa 299
|||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |
Sbjct: 440 tcttagctcttgaaagccctgggtcatgcccccccccc--c--caacaacaacaacaaca 495
Query: 300 cccagctaaatattgagataaaaagtaagtgtactcatgctgccaactttataagaacat 359
||| ||||||||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct: 496 ccctgctaaatattgagataaaaagtaagtgtactcacgccgccaactttatgagaacat 555
Query: 360 aggttttcagctctgttaaatgctaagaccatcaagattcttaacaggaatattaccttt 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 556 aggttttcagctctgttaaatgctaagaccatcaagattcttaacaggaatattactttt 615
Query: 420 gctaaaaggtatcttttaaaacatgtgttactatttttggacctagaatttaacaagttt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gctaaaaggtatcttttaaaacatgtgttactatttttggacctagaatttaacaagttt 675
Query: 480 ttgcctttacttatttatttatttaggccctttccccccttttgttgaaaatatatactt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 676 ttgcctttacttatttatttatttaggccctttccccccttttgttgaaaatatata-tt 734
Query: 540 ttctcatagaataaatatatgttgattatggttttccctctgcttactctttctagttcc 599
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 735 ttctcatagaataaatatatgttgattacggttttccctctgcttactctttccagttcc 794
Query: 600 tccccaccttctctctggaaccaatccctttgtctct 636
||||||||||||||||||| |||| ||||||||||||
Sbjct: 795 tccccaccttctctctggagccaacccctttgtctct 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
