BAC Information

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BAC

Clone NameMSMg01-543E22
Chromosome3 (Build37)
Map Location 16,009,911 - 16,010,227
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039985, LOC751864, Sirpb1, LOC668101, LOC100038947, LOC622425, LOC664795, LOC381484
Downstream geneYthdf3, LOC100040034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543E22.T7 (MSMg01no543_e22.b1)MSMg01-543E22.TJ (MSMg01no543_e22.g1)
ACCAG608874AG608875
length752736
length of high quality
(start - end)
311 (52 - 362)548 (83 - 630)
definitionCHROMAT_FILE: MSMg01no543_e22.b1 PHD_FILE: MSMg01no543_e22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:38 2005CHROMAT_FILE: MSMg01no543_e22.g1 PHD_FILE: MSMg01no543_e22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAGGCTTTGACCCTCAAGGTGTCCAATTTTGAGCTGGTG
ATGATGCTTCCCATTCCCTGGCTGTGTGGTGTCGCCTTACCTCATTCCTC
AGGGAGCATTTGTATAGCTAGAGGAAGGTGGGTGTCTTCCCCTCCTTGGG
GCAGGGATTGATATATCCCTCCCTCTCTCTCTCTCTTTCACTCTCTTCTC
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTCTCTCTTTC
ACTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTGTGTTTGTCTTTCCCTCTCTCTCTCTCTCTGATATCCT
ATTTGTTTTATCACCTTTTTCCCCACGTTTGTTGACTGTTATTGTTATTC
TTATCAAACATAAGCACCCGTCGTCACACTAATTGACTCTTCTTTCGGTC
TGAGATTTTCTTATTATCTCCTTTTGAGTTTTGGCCTCACTGTGTGCCAT
TGTGTCATTGATTTCGCGGCTGTTTTATTTGATTAAGATGTGCAATTGAT
ACTCTCTCATTGTGTTCCTTTACCTTCTCCACACAATTTCCCCCTTGTGT
TCAGTTCTCCCCTTTTACGGTCCCCTCAATTATTTGGTTTATTTTTACTG
TGTCGCCACTTTCCCCTCCTGATTCCTCGAATTCCCCCACATCTTTTTTT
TT
TTTCCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTACAGCTTATAAACATC
TTCAGAGAAGTGACTAGGACTCAGCAGAACTTAGGAAATTAGTCTGAACA
GGTGAGAGGGTGCGCCAGAGAACCGGACAGCTTCTGGGACGGGCAGAAGC
ACAGAGCCGCTGAGGCAGCAGCCTGGGCGGGCCGCAGATAACCAGCCACC
ATCCGGACCAGAGGACAGGTGTCCGCCTGGCTTGGGAAGCGGCCTCAGCC
TCAGCAGCAGCGGTCGCCATCTTGGTTCCGGGACTCAGCAGAACTTAGGA
AATTAGTCTGAACAGGTTAGAGGGTGCGCCAGAGAACCGGACAGCTTCTG
GGACGGGCAGAAGCACAGAGCCGCTGAGGCAGCAGCCTGGGCGGGCCGCA
GACAACCGGCCACCATCCAGACCAGAGGACAGGTGTCCGCCTGGCTTGGG
AGGCGACCTCAGCCTCAGCAGCAGCGGTCGCCATCTGGGTTCCGGGACTC
CGCGGGACCTAGGAAATTAGTCTGAACAGGTTAGAGGGTGCTCCAGAGAA
CCGGACAGCTTCTGGGACGGGCAGAAGCACAGAGCCGCTGAGGCAGCAGC
CTGGGCGGGCCGCAGATAACCGGCCACCATCCGGACCAGAAGACAGGTGT
CCGCCTGGCTCGGGAGACGGTCTTGGTCTCAGGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_e22.b1 MSMg01no543_e22.b1 CHROMAT_FILE:
MSMg01no543_e22.b1 PHD_FILE: MSMg01no543_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:38 2005
         (311 letters)



>mm_chr3_16009707_16010417
          Length = 711

 Score =  397 bits (205), Expect = e-115
 Identities = 288/317 (90%), Gaps = 10/317 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggctttgaccctcaaggtgtccaattttgagctggtgatgatgcttcccatt 64
           |||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 205 gaattccaggctttgaccttcaaggtgtccgattttgagctggtgatgattcttcccatt 264

                                                                       
Query: 65  ccctggctgtgtggtgtcgccttacctcattcctcagggagcatttgtatagctagagga 124
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 ccctggctgtgtggtgtcgccttacctcattcctcagggagcatttggatagctagagga 324

                                                                       
Query: 125 aggtgggtgtcttcccctccttggggcagggattgatatatccctccct---ctctctct 181
           ||||||||||||||||||||||||||||||||||||||||||||||||    | ||||||
Sbjct: 325 aggtgggtgtcttcccctccttggggcagggattgatatatccctccccgccccctctct 384

                                                                       
Query: 182 ctctttcactctcttctcttctcttctct-tctct-tctct-tctct-tctct-tctct- 235
           |||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||| ||||| 
Sbjct: 385 ctctttcactctctactcttctcttctctctctctctctctctctctctctctctctctc 444

                                                                       
Query: 236 tctctctctctttcactctct-tctctctctctctctctctctctctctctctctctctc 294
           || ||||| || || |||||  |||| ||||| ||||| ||||| ||||| ||||| |||
Sbjct: 445 tccctctccctctccctctccctctccctctccctctccctctccctctccctctccctc 504

                            
Query: 295 tctctctctctctctct 311
           || ||||||||||||||
Sbjct: 505 tccctctctctctctct 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 108
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)