Query= MSMg01no543_h09.b1 MSMg01no543_h09.b1 CHROMAT_FILE:
MSMg01no543_h09.b1 PHD_FILE: MSMg01no543_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:50 2005
(528 letters)
>mm_chr3_136480758_136481689
Length = 932
Score = 917 bits (474), Expect = 0.0
Identities = 516/532 (96%), Gaps = 4/532 (0%)
Strand = Plus / Minus
Query: 1 agccatactttaatatattttataatcgtgaccctggaagacaaagcttatgcgttttca 60
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 550 agccatacttgaatatattttataaccgtgaccctggaagacaaagcttatgcgttttct 491
Query: 61 atgctgcttcatttctatagtttagaccaatgagatcaagtcaccacactcagacatttc 120
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 atgttgcttcatttctacagtttagaccaatgagatcaagtcaccacactcagacatttc 431
Query: 121 tttactcccaagaatagctgcctgggatctttaaattcagaatttgcagatttataataa 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 430 tttactcccaagaatagctgcctgggatctttacattcagaatttgcagatttataataa 371
Query: 181 tatgtacacacattaaatgccacaaacctgcgtctttccccagtggcctctctattatta 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 370 tatgtacacacattaaatgccacaaacctgcgtccttccccagtggcctctctattatta 311
Query: 241 cttttacttctcagtgtagaagtgatttagtttagaagtgattcagtcagtgcaccaggg 300
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 310 cttttacttctcagtgtagaagtgattcagtgtagaagtgattcagtcagtgcaccaggg 251
Query: 301 ----gtgtgtgtgtgtgtgcacgcgtgcccccattcatgcatgttcatgttataaatata 356
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gtgtgtgtgtgtgtgtgtgcgtgcgtgcccccattcatgcatgttcatgttataaatata 191
Query: 357 taaatataaattatatatttataaatataatatataaattatatttacatatgtaattat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 taaatataaattatatatttataaatataatatataaattatatttacatatgtaattat 131
Query: 417 attacatataaattgtatacctacatgtataatatattacacatataaataatatataaa 476
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 130 attacatataaattgtatacctacacgtataatatattacacatataaataatatataaa 71
Query: 477 ttatataataaactataaataacaggtggatttctatataaaaaatttaaaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 ttatataataaactataaataacaggtggatttctatataaaaaatttaaaa 19
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 932
Length adjustment: 10
Effective length of query: 518
Effective length of database: 922
Effective search space: 477596
Effective search space used: 477596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_h09.g1 MSMg01no543_h09.g1 CHROMAT_FILE:
MSMg01no543_h09.g1 PHD_FILE: MSMg01no543_h09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:50 2005
(609 letters)
>mm_chr3_136346894_136347902
Length = 1009
Score = 1093 bits (565), Expect = 0.0
Identities = 598/609 (98%)
Strand = Plus / Plus
Query: 1 agccctgcattctctatatgtcactgcaagcccgcagcaggaagccacgtgtccgcgttg 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 agccctgcattctctatatgtcactgcaagcccgcggcaggaagccacgtgtccgcgttg 260
Query: 61 aattcatttctcatcttgaaagaagggatggtgctaagtttgcaagtttgagacaaggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattcatttctcatcttgaaagaagggatggtgctaagtttgcaagtttgagacaaggag 320
Query: 121 agaaatcccgtgcagcgacgccaagcctggggcctgctcagaaagagcgtttggaacgtg 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 agaaatcccgtgcagagacgccaagcctggggcctgctcagaaagagcgtttggagcgtg 380
Query: 181 gcagaccctgttgctttagtagaggacagctccttggagagccaggctttctactcctag 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagaccctgttgctttagtagacgacagctccttggagagccaggctttctactcctag 440
Query: 241 aagggctttctttgcattaggtgtgtgtttcctcttatcctgtccaccactctcctggtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagggctttctttgcattaggtgtgtgtttcctcttatcctgtccaccactctcctggtg 500
Query: 301 gcttgggggcctctgcccttacagagaagaagttcgtattggtctgcgaagactttccca 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcttgggggcctctgcccttacagagaagaagttcgtattggtctgcgaagactttcccg 560
Query: 361 agtccagactccgttccctttgaacagatgggctgtgtgctccatggctttgccccttct 420
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 agtccagactcagttccctttgaacagatgggctgtgtgctccatggctttgcccctttt 620
Query: 421 ctgttttgtttgcagctcctcttgaccaagtcctgcatgttcatgttcttatatctctgt 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagttttgtttgcagctcctcttgaccaagtcctgcatgttcatgttcttatatctctgt 680
Query: 481 gctcagccctccaggctgtcttgcttccttcaagtcattgccgatgactgcttgtagacg 540
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 681 gctcagccctccaggctgtcttgcttccttcaagtcatcgctgatgactgcttgtagacg 740
Query: 541 aatgactagcacatctatatttacaatctgttctttccccctctggaaggatttctcaag 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gatgactagcacatctatatttacaatctgttctttccccctctggaaggatttctcaag 800
Query: 601 ccctgcgac 609
|||||||||
Sbjct: 801 ccctgcgac 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
