Query= MSMg01no543_k21.b1 MSMg01no543_k21.b1 CHROMAT_FILE:
MSMg01no543_k21.b1 PHD_FILE: MSMg01no543_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:07 2005
(681 letters)
>mm_chr3_75731113_75732193
Length = 1081
Score = 571 bits (295), Expect = e-167
Identities = 310/315 (98%)
Strand = Plus / Plus
Query: 361 ggcagagggtgacacttctatttactatccagagcttcataactcaataaacagcagaaa 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcagagggtaacacttctatttactatccagagcttcataactcaataaacagcagaaa 620
Query: 421 tgaaacctaacaaaatatattaacattgtgtagccttgtgttttcttaggaaaatacaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaaacctaacaaaatatattaacattgtgtagccttgtgttttcttaggaaaatacaca 680
Query: 481 aaatatttttagctttggaactaagaaaaatagaggatgccacaaatttaagttttcctc 540
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 681 aaatatttttagctttggaactaaaaaaaatagaggatgccacaaatttaagttttcctc 740
Query: 541 cttaatttaaatatgtttacaaaaatattaatcaagtaaaaatgcttatgactaatccta 600
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 741 cttaatttaaatatgtttacaaaaatattaatcaggtaaaaatgcttatgactaatcctg 800
Query: 601 caccaaagaaattcaagcagcttttcccaaatattgataatgcacgaataatttcctaaa 660
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 801 caccaaagaaattcaagcagcttttcccaaatattaataatgcacgaataatttcctaaa 860
Query: 661 aggtttatgttcttt 675
|||||||||||||||
Sbjct: 861 aggtttatgttcttt 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_k21.g1 MSMg01no543_k21.g1 CHROMAT_FILE:
MSMg01no543_k21.g1 PHD_FILE: MSMg01no543_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:07 2005
(597 letters)
>mm_chr3_75633199_75634195
Length = 997
Score = 990 bits (512), Expect = 0.0
Identities = 575/606 (94%), Gaps = 17/606 (2%)
Strand = Plus / Plus
Query: 1 gcagtgattgaccagaaagagcaggcacatgccatgcatctaaaaatacttattcttaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gcagtgattgaccagaaagagcaggcacatgccatgcatctaaaaatacttattcttaaa 259
Query: 61 gtaaaagagaaaacaaaaaacttataaatgtctagactatttcacacaaacaatcaatat 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 260 gtaaaagagaaaacaaaaaacttataaatgtctagactatttcacgcaaacaatcaatat 319
Query: 121 ctggctttggaggaacaatcccatagtgaaaataaaattattcatccttgtagttttaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctggctttggaggaacaatcccatagtgaaaataaaattattcatccttgtagttttaaa 379
Query: 181 cagcgagcttccagccctgaggggagaaaaggccatttctacagcagcttttttaaaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagcgagcttccagccctgaggggagaaaaggccatttctacagcagcttttttaaaata 439
Query: 241 aacaagaagtagagatcacgcaaggccgattcttttagaagatttgtttcatgaaaatga 300
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 440 aacaagaagtagagatcatgcaaggccaattcttttagaagatttgtttcatgaaaatga 499
Query: 301 agtgatgagccccaaagccttaaacaatttcttatggattttcctagtggaaaacagata 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 500 agtgatgagccccaaagccttaaacaatttcttatggactttcctagtggaaaacagata 559
Query: 361 cactgcagacaattttttaagtctctgtccatagagtctgcctgttataatgtagtgttt 420
||||| |||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 560 cactg--------tttttaggtctctgtccatagagtctgcctgttataatacagtgttt 611
Query: 421 gaagtaaagattttaaatgggcaaaatgcttatgtggttgttaggtagacagggctttct 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 612 gaagtaaagattttaaatgggcaaaatgcttatgtaattgttaggtagacagggctttcc 671
Query: 481 caaagctagaggcaaga---------aaaggtatgcaatgtttactttaaagaaaaccaa 531
||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 672 caaagctagaggcaagacttggaagaaaaggtatgcaatgttttctttaaagaaaaccaa 731
Query: 532 aatgaaatgcaaagaggggaaacgtatcttttctcacactccagcaccctgcattgtgca 591
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 732 aatgaaatgcaaagagggggaacgcatcttttctcacactccagcaccctgcattgtgca 791
Query: 592 cctgaa 597
| ||||
Sbjct: 792 cttgaa 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
