Query= MSMg01no543_l21.b1 MSMg01no543_l21.b1 CHROMAT_FILE:
MSMg01no543_l21.b1 PHD_FILE: MSMg01no543_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:12 2005
(716 letters)
>mm_chr3_26094090_26095208
Length = 1119
Score = 1257 bits (650), Expect = 0.0
Identities = 708/746 (94%), Gaps = 33/746 (4%)
Strand = Plus / Minus
Query: 4 ggaattcactggctcaaactatatacctcagtgatcatcagtagacttagcaccatcatt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 ggaattcactggctcaaactatatacctcagtgatcatcagtagacttagcaccatcatt 1045
Query: 64 ctgaaactacagagttccacttaggttttacattttgactgtctg--------------- 108
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 ctgaaactacagagttccacttaggttttacattttgactgtctgcacacacacatacac 985
Query: 109 ---cacacacacacacacacacac--acacacacacacacacacacacacacac------ 157
||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 984 acacacacacacacacacacacacatacacacacacacacacacacacacacacagagag 925
Query: 158 ----agagggggggatgtttgaatgactttcttaaactgtctatgtgatgtttttatttg 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 agagagagggggggatgtttgaatgactttcttaaactgtctatgtgatgtttttatttg 865
Query: 214 tgaattaattagaaaaacaaaatcttaaaaagagaaaatgacaagaataaaaaatccctg 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 tgaattaattagaaaaacaaaatcttaaaaagagaaaatgacaagaataaaaaatccctg 805
Query: 274 gaagttctatcattctgtacagaattaacattctttttcttattatgacaataaatctgt 333
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 804 gaagttctatcattctggacagaattaacattcattttcttattatgacaataaatctgt 745
Query: 334 tatcaaggaccacaaatgccttgggtgagctgtcctttggcgtttgagaaggaaaccatt 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tatcaaggaccacaaatgccttgggtgagctgtcctttggcgtttgagaaggaaaccatt 685
Query: 394 ttgcttggcttgtttatcatggtacaagtgttgagtgttgctggataaggctttctcttg 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttgcttggcttgtttatcatggtacaagtgttgagtgttgctggataaggctttctcttg 625
Query: 454 agagacttgcatttagtctcctctttcctactcattccctaacctatactattcataaac 513
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 624 agagacttgcatttagtctcctcttttctactcattccctaacctatactattcataaac 565
Query: 514 aattatcttctattttttt--aatataatgttactttatgtgtttattattgttctattc 571
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aattatcttctattttttttaaatataatgttactttatgtgtttattattgttctattc 505
Query: 572 agatctgttcccatttcatctaaccgttccatttttagtaacaataaaatgtatactttc 631
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 504 agatctgtccccatttcatctaaccgttacatttttagtaacaataaaatgtatactttc 445
Query: 632 atccaagtag-taacttatgtattctgaatatttcccctaaattttctaccattcatatt 690
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atccaagtaggtaacttatgtattctgaatatttcccctaaattttctaccattcatatt 385
Query: 691 cagatgacatgacatgacttcatctg 716
||||||||||||||||||||||||||
Sbjct: 384 cagatgacatgacatgacttcatctg 359
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 716
Length of database: 1119
Length adjustment: 10
Effective length of query: 706
Effective length of database: 1109
Effective search space: 782954
Effective search space used: 782954
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no543_l21.g1 MSMg01no543_l21.g1 CHROMAT_FILE:
MSMg01no543_l21.g1 PHD_FILE: MSMg01no543_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:12 2005
(661 letters)
>mm_chr3_25916578_25917638
Length = 1061
Score = 1278 bits (661), Expect = 0.0
Identities = 661/661 (100%)
Strand = Plus / Plus
Query: 1 actgagcccacatgatggacactgagctctaattcctcaaggtgtcttctcacctcaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgagcccacatgatggacactgagctctaattcctcaaggtgtcttctcacctcaata 260
Query: 61 cccatgttatgacccacatgtgccagcacacagtggttaattaattaattaattaattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccatgttatgacccacatgtgccagcacacagtggttaattaattaattaattaattaa 320
Query: 121 ctaacacgaaaaattcaacatagaatcttgtgtgtatatatgaatgggtttatcaatatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaacacgaaaaattcaacatagaatcttgtgtgtatatatgaatgggtttatcaatatc 380
Query: 181 tgtcttaactcagctactacaaatatgtcaataattacaaataagacctcttgtcaactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcttaactcagctactacaaatatgtcaataattacaaataagacctcttgtcaactt 440
Query: 241 aaatctgtccctgactgacctatattttcaatctgtaatctgaaggtcgatggtcatagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatctgtccctgactgacctatattttcaatctgtaatctgaaggtcgatggtcatagt 500
Query: 301 taacagtttgctgatgactgacaaatacaatggccacaggtcagatcacccaggagctat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taacagtttgctgatgactgacaaatacaatggccacaggtcagatcacccaggagctat 560
Query: 361 cagaaagaagcagactaaagactaggcaggcaaatcagagtccaacaacgtaagtaaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagaaagaagcagactaaagactaggcaggcaaatcagagtccaacaacgtaagtaaaat 620
Query: 421 atagctaggaaaacagaaaatgctaaatgtggaactaaaaacatccttatacttgtaggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atagctaggaaaacagaaaatgctaaatgtggaactaaaaacatccttatacttgtaggg 680
Query: 481 gacaagataagatagaatttcctgcccaaatacctgggagccacagatctatctgaaaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacaagataagatagaatttcctgcccaaatacctgggagccacagatctatctgaaaga 740
Query: 541 atccactctaccaaggaaattaacaatataaagacacatggaaaggaatatgtgttatca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atccactctaccaaggaaattaacaatataaagacacatggaaaggaatatgtgttatca 800
Query: 601 ttgttcacataatggggtaatttcaagagtccaagtcttaatgatatgaattgtctacat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttgttcacataatggggtaatttcaagagtccaagtcttaatgatatgaattgtctacat 860
Query: 661 c 661
|
Sbjct: 861 c 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
