Query= MSMg01no543_p12.b1 MSMg01no543_p12.b1 CHROMAT_FILE:
MSMg01no543_p12.b1 PHD_FILE: MSMg01no543_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:29 2005
(287 letters)
>mm_chr3_19474432_19475118
Length = 687
Score = 532 bits (275), Expect = e-155
Identities = 284/287 (98%)
Strand = Plus / Plus
Query: 1 tacttttctccttgcttttaaattttaaaagaaaattagccctgcgacaccatccagaca 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacttttctccttgcttttaatttttaaaagaaaattagccctgcgacaccatccagaca 260
Query: 61 agaatccagatgacccatctgctgctgagaagtttaaagaaatcaacaacgcccacacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaatccagatgacccatctgctgctgagaagtttaaagaaatcaacaacgcccacacaa 320
Query: 121 tcctcaccgacacctcatagagaaacatatatgacaagtatggatcgctgggactctacg 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctcaccgacacctcaaagagaaacatatatgacaagtatggatcgctgggactctacg 380
Query: 181 tggctgaacaatttggagatgaaaacgttaacacatacttcatgttgtcaagctggtggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggctgaacaatttggagatgaaaacgttaacacatacttcatgttgtcaagctggtggg 440
Query: 241 caaaggtaaatcacttttttttccctcaaaatcaatttcctggaaaa 287
||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 caaaggtaaatcacttttttttccctcaaaagcaatttcctggaaaa 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no543_p12.g1 MSMg01no543_p12.g1 CHROMAT_FILE:
MSMg01no543_p12.g1 PHD_FILE: MSMg01no543_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:29 2005
(528 letters)
>mm_chr3_19609356_19610284
Length = 929
Score = 621 bits (321), Expect = 0.0
Identities = 339/345 (98%), Gaps = 1/345 (0%)
Strand = Plus / Minus
Query: 185 aataaaaagaaattcaacaaatgccaatgtcagcttggcagctagtctccatggttctgt 244
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 929 aataaaaagaaattcaacaaatgccaatgtcagcttggcagttagtctccatggttctgt 870
Query: 245 gaaagaaatatagcactcatcagtaggaaccctactggaaccagggcttgaccaaagatc 304
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 869 gaaagaaatatagcactcatcagtacgaaccctactggaaccagggcttgaccaaagatc 810
Query: 305 taaagataacactgtggggcgagtcatcagctccttgaggacatctggtcaacactgagc 364
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 809 tgaagataacactgtggggcgagtcatcagttccttgaggacatctggtcaacactgagc 750
Query: 365 atagtggaggagggagggtagatctagtctaactaatggtgagaattctaatgttagatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 atagtggaggagggagggtagatctagtctaactaatggtgagaattctaatgttagatt 690
Query: 425 tctcaatttattaatactattttaaatttctctctattaatgattctcaatatcttgtct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tctcaatttattaatactattttaaatttctctctattaatgattctcaatatcttgtct 630
Query: 485 ttactcc-gattactggtattttatgataagtctaaaggtatata 528
||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 629 ttattcctgattactggtattttatgataagtctaaaggtatata 585
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 929
Length adjustment: 10
Effective length of query: 518
Effective length of database: 919
Effective search space: 476042
Effective search space used: 476042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
